JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF24_chr18_35327227_35349420	0/0	t0026	5151	1	0	0	0	0	1	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0027	5150	1	0	0	1	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0028	5151	1	0	0	0	0	1	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0029	5151	1	1	0	0	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0030	5150	1	0	0	1	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0031	5151	1	1	0	0	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0032	5151	1	0	0	1	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0033	5151	1	0	0	1	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0034	5150	1	1	0	0	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0035	5151	1	0	0	0	0	1	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0036	5151	1	1	0	0	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0037	5151	1	1	0	0	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0038	5150	1	0	0	1	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0039	5151	1	1	0	0	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF250_chr8_144871955_144906453	1/0	t0001	4670	142	24	32	66	9	10	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/1	t0002	4667	88	3	22	48	5	9	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0003	4666	43	0	7	36	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0004	4668	34	32	2	0	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0005	4668	12	12	0	0	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0006	4666	7	0	0	7	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0007	4666	7	0	4	2	0	1	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0008	4666	5	0	0	5	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0009	4668	5	4	1	0	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0010	4669	4	0	0	1	0	3	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0011	4668	3	3	0	0	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0012	4666	3	3	0	0	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0013	4670	3	0	3	0	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0014	4670	3	0	0	3	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0015	4670	3	3	0	0	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0016	4667	2	0	0	2	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0017	4670	2	2	0	0	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0018	4670	2	0	0	2	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0019	4667	1	0	0	1	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0020	4668	1	0	1	0	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0021	4670	1	1	0	0	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0022	4666	1	1	0	0	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0023	4666	1	0	0	0	0	1	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0024	4667	1	0	0	1	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0025	4667	1	0	0	1	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0026	4667	1	0	0	1	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0027	4667	1	0	0	0	0	1	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0028	4667	1	1	0	0	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0029	4667	1	0	0	0	0	1	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0030	4667	1	0	1	0	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0031	4668	1	1	0	0	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0032	4668	1	1	0	0	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0033	4669	1	1	0	0	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0034	4670	1	0	0	1	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0035	4669	1	0	0	1	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0036	4670	1	1	0	0	0	0	copy fasta	ZNF250	chr8	144871955	144906453