JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF250_chr8_144871955_144906453	0/0	t0037	4670	1	1	0	0	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0038	4666	1	1	0	0	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0039	4666	1	0	1	0	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0040	4667	1	0	0	0	0	1	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0041	4670	1	0	0	0	0	1	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	t0042	4667	1	1	0	0	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF251_chr8_144715909_144760531	0/1	t0001	938	276	69	52	108	14	32	copy fasta	ZNF251	chr8	144715909	144760531
ZNF251_chr8_144715909_144760531	0/0	t0002	938	82	0	7	72	0	3	copy fasta	ZNF251	chr8	144715909	144760531
ZNF251_chr8_144715909_144760531	0/0	t0003	938	17	15	2	0	0	0	copy fasta	ZNF251	chr8	144715909	144760531
ZNF251_chr8_144715909_144760531	0/0	t0004	938	7	7	0	0	0	0	copy fasta	ZNF251	chr8	144715909	144760531
ZNF251_chr8_144715909_144760531	0/0	t0005	938	2	2	0	0	0	0	copy fasta	ZNF251	chr8	144715909	144760531
ZNF251_chr8_144715909_144760531	0/0	t0006	938	1	0	0	0	0	1	copy fasta	ZNF251	chr8	144715909	144760531
ZNF251_chr8_144715909_144760531	0/0	t0007	938	1	0	1	0	0	0	copy fasta	ZNF251	chr8	144715909	144760531
ZNF251_chr8_144715909_144760531	0/0	t0008	938	1	1	0	0	0	0	copy fasta	ZNF251	chr8	144715909	144760531
ZNF251_chr8_144715909_144760531	0/0	t0009	938	1	1	0	0	0	0	copy fasta	ZNF251	chr8	144715909	144760531
ZNF251_chr8_144715909_144760531	0/0	t0010	938	1	1	0	0	0	0	copy fasta	ZNF251	chr8	144715909	144760531
ZNF253_chr19_19860882_19899674	1/1	t0001	2043	107	9	34	31	11	20	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	t0002	2009	79	13	6	52	1	7	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	t0003	2043	40	6	10	19	1	4	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	t0004	2009	37	12	1	20	1	3	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	t0005	2009	33	2	6	24	0	1	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	t0006	2009	20	16	2	2	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	t0007	2009	10	7	1	0	1	1	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	t0008	2009	9	8	1	0	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	t0009	2043	8	5	2	0	1	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	t0010	2009	6	0	0	6	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	t0011	2009	4	2	2	0	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	t0012	2006	3	3	0	0	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	t0013	2009	2	2	0	0	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	t0014	2043	2	2	0	0	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	t0015	2043	1	0	1	0	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	t0016	2006	1	0	0	1	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	t0017	2053	1	0	0	1	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	t0018	2009	1	0	0	1	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	t0019	2009	1	0	0	1	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	t0020	2009	1	1	0	0	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	t0021	2043	1	0	0	1	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	t0022	2009	1	0	0	0	0	1	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	t0023	2009	1	0	0	1	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	t0024	2009	1	0	0	0	0	1	copy fasta	ZNF253	chr19	19860882	19899674
ZNF254_chr19_24082187_24134968	1/0	t0001	2110	251	60	44	110	8	28	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	t0002	2107	63	19	7	32	0	5	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	t0003	2110	37	4	14	5	4	10	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	t0004	2107	8	5	3	0	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	t0005	2110	3	0	0	0	2	1	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	t0006	2077	2	0	0	2	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	t0007	2110	2	2	0	0	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	t0008	2110	1	0	0	1	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	t0009	2107	1	1	0	0	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	t0010	2110	1	0	1	0	0	0	copy fasta	ZNF254	chr19	24082187	24134968