JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF25_chr10_37944573_37981647	1/0	t0003	2782	43	13	8	19	1	1	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	t0004	2782	15	0	0	12	0	3	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	t0005	2781	8	1	5	0	2	0	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	t0006	2782	7	7	0	0	0	0	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	t0007	2782	7	0	0	7	0	0	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	t0008	2783	6	1	0	2	0	3	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	t0009	2780	6	5	1	0	0	0	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	t0010	2778	5	4	1	0	0	0	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	t0011	2782	3	2	1	0	0	0	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	t0012	2782	3	0	3	0	0	0	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	t0013	2782	3	0	1	0	2	0	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	t0014	2783	2	0	0	1	0	1	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	t0015	2782	1	0	0	1	0	0	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	t0016	2782	1	0	1	0	0	0	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	t0017	2782	1	1	0	0	0	0	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	t0018	2780	1	0	0	1	0	0	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	t0019	2782	1	1	0	0	0	0	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	t0020	2782	1	0	0	0	0	1	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	t0021	2783	1	0	0	1	0	0	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	t0022	2782	1	1	0	0	0	0	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	t0023	2782	1	0	1	0	0	0	copy fasta	ZNF25	chr10	37944573	37981647
ZNF260_chr19_36505687_36533271	1/1	t0001	4047	142	18	23	73	6	20	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0002	4047	55	15	7	26	3	4	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0003	4044	52	14	12	14	1	11	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0004	4044	41	19	6	13	0	3	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0005	4044	19	0	0	17	1	1	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0006	4044	17	1	11	0	2	3	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0007	4045	9	8	0	1	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0008	4047	6	0	6	0	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0009	4046	5	0	2	3	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0010	4048	4	1	0	3	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0011	4043	4	1	2	0	1	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0012	4046	2	2	0	0	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0013	4047	2	0	2	0	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0014	4044	1	0	1	0	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0015	4044	1	0	0	1	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0016	4046	1	1	0	0	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0017	4046	1	1	0	0	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0018	4046	1	1	0	0	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0019	4044	1	0	0	1	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0020	4044	1	1	0	0	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0021	4044	1	0	0	1	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0022	4047	1	0	0	1	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0023	4047	1	1	0	0	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0024	4045	1	1	0	0	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0025	4045	1	1	0	0	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0026	4045	1	1	0	0	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0027	4045	1	0	0	1	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0028	4044	1	1	0	0	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0029	4047	1	1	0	0	0	0	copy fasta	ZNF260	chr19	36505687	36533271