JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C1orf74_chr1_209774208_209789559	0/0	t0004	3875	54	2	14	24	4	10	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0005	3875	6	6	0	0	0	0	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0006	3875	5	0	1	0	1	3	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0007	3875	5	5	0	0	0	0	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0008	3875	4	4	0	0	0	0	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0009	3875	4	0	4	0	0	0	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0010	3875	4	4	0	0	0	0	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0011	3875	4	3	1	0	0	0	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0012	3875	3	0	0	3	0	0	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0013	3875	2	2	0	0	0	0	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0014	3875	2	2	0	0	0	0	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0015	3875	1	0	0	1	0	0	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0016	3875	1	0	1	0	0	0	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0017	3875	1	0	0	1	0	0	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0018	3875	1	0	0	0	0	1	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0019	3877	1	0	0	1	0	0	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0020	3875	1	0	1	0	0	0	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0021	3875	1	0	0	0	0	1	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0022	3875	1	0	0	0	0	1	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0023	3875	1	0	0	1	0	0	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0024	3875	1	0	0	1	0	0	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0025	3875	1	0	0	1	0	0	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0026	3875	1	1	0	0	0	0	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0027	3875	1	1	0	0	0	0	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0028	3875	1	0	0	1	0	0	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0029	3875	1	1	0	0	0	0	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0030	3875	1	1	0	0	0	0	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0031	3875	1	0	1	0	0	0	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0032	3875	1	0	0	1	0	0	copy fasta	C1orf74	chr1	209774208	209789559
C1orf87_chr1_59985394_60078770	1/1	t0001	388	361	72	71	174	10	32	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	t0002	388	9	8	1	0	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	t0003	388	8	0	0	8	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	t0004	388	1	0	0	0	0	1	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	t0005	388	1	0	0	0	0	1	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	t0006	388	1	1	0	0	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	t0007	388	1	1	0	0	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf94_chr1_34171907_34224131	0/0	t0001	1248	69	16	12	26	3	12	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	t0002	1248	60	2	19	30	2	7	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/1	t0003	1254	50	15	8	18	6	2	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	1/0	t0004	1254	37	12	6	13	1	4	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	t0005	1254	31	21	4	5	0	1	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	t0006	1254	23	0	6	16	1	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	t0007	1254	18	0	2	14	0	2	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	t0008	1254	11	6	0	2	0	3	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	t0009	1254	9	5	3	1	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	t0010	1254	7	0	0	6	0	1	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	t0011	1254	7	0	0	6	0	1	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	t0012	1252	4	4	0	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	t0013	1254	3	1	0	0	0	2	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	t0014	1254	3	3	0	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131