JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF268_chr12_133176495_133219832	0/0	t0024	10552	2	0	1	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0025	10550	2	0	1	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0026	10548	2	0	0	1	0	1	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0027	10544	2	0	2	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0028	10547	2	0	0	2	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0029	10470	2	2	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0030	10511	2	2	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0031	10520	2	2	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0032	10530	2	2	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0033	10540	2	2	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0034	10514	2	2	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0035	10511	2	2	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0036	10502	2	0	2	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0037	10501	2	0	1	0	1	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0038	10497	2	0	0	0	1	1	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0039	10496	2	0	0	2	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0040	10495	2	0	0	1	1	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0041	10483	2	0	0	2	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0042	10495	2	0	0	1	0	1	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0043	10487	2	2	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0044	10486	2	2	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0045	10482	2	0	0	2	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0046	10473	2	2	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0047	10486	2	0	0	0	0	2	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0048	10485	2	0	0	2	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0049	10474	2	1	1	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0050	10487	2	0	2	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0051	10545	1	0	0	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0052	10558	1	0	0	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0053	10519	1	0	0	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0054	10533	1	0	0	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0055	10553	1	0	0	0	0	1	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0056	10553	1	0	0	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0057	10552	1	0	1	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0058	10529	1	0	0	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0059	10559	1	0	0	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0060	10551	1	0	0	0	0	1	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0061	10549	1	1	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0062	10547	1	0	0	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0063	10545	1	0	1	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0064	10543	1	0	1	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0065	10517	1	0	0	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0066	10555	1	0	0	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0067	10546	1	0	0	0	0	1	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0068	10555	1	0	1	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0069	10548	1	0	1	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0070	10582	1	0	0	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0071	10562	1	0	1	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0072	10560	1	0	0	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0073	10558	1	0	0	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832