JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF268_chr12_133176495_133219832	0/0	t0174	10486	1	0	0	0	0	1	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0175	10485	1	0	1	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0176	10474	1	0	1	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0177	10474	1	1	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0178	10487	1	0	0	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0179	10487	1	0	0	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0180	10487	1	0	0	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0181	10488	1	0	0	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0182	10489	1	0	0	0	0	1	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0183	10486	1	0	0	0	0	1	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0184	10488	1	1	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0185	10487	1	0	0	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0186	10487	1	0	0	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0187	10487	1	0	0	0	0	1	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0188	10487	1	0	1	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0189	10487	1	0	1	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0190	10486	1	1	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF26_chr12_132981367_133032102	0/0	t0001	16088	16	0	4	12	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0002	16089	15	0	5	10	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0003	16087	9	1	4	3	1	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0004	16090	7	1	0	6	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0005	16088	6	0	0	6	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0006	16095	4	0	0	3	0	1	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0007	16089	4	2	0	0	0	2	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0008	16094	3	1	2	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0009	16095	3	0	1	1	0	1	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0010	16087	3	0	0	3	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0011	16086	3	0	1	1	1	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0012	16087	3	0	3	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0013	16099	3	3	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0014	16101	3	0	1	0	2	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0015	16096	3	1	2	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0016	16097	3	1	2	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0017	16076	2	0	0	0	2	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0018	16092	2	0	0	2	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0019	16094	2	2	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0020	16086	2	2	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0021	16089	2	0	0	2	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0022	16087	2	0	2	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0023	16089	2	2	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0024	16095	2	1	1	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0025	16089	2	0	0	2	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0026	16089	2	0	2	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0027	16088	2	0	0	2	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0028	16088	2	0	2	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0029	16091	2	0	0	0	1	1	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0030	16089	2	0	0	1	0	1	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0031	16097	2	2	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0032	16109	2	2	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0033	16110	2	2	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102