JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF26_chr12_132981367_133032102	0/0	t0034	16094	2	0	1	0	0	1	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0035	16098	2	0	1	0	0	1	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0036	16100	2	0	0	2	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0037	16100	2	0	0	0	0	2	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0038	16100	2	1	0	1	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0039	16101	2	0	0	1	0	1	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0040	16100	2	0	1	0	1	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0041	16101	2	0	0	1	0	1	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0042	16099	2	2	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0043	16097	1	1	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0044	16087	1	0	0	0	1	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0045	16088	1	0	0	0	1	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0046	16082	1	1	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0047	16084	1	1	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0048	16094	1	0	1	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0049	16096	1	0	1	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0050	16088	1	0	0	0	0	1	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0051	16093	1	0	0	1	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0052	16087	1	0	0	1	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0053	16094	1	0	1	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0054	16094	1	0	0	1	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0055	16095	1	0	1	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0056	16094	1	0	0	1	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0057	16095	1	0	0	1	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0058	16092	1	0	0	1	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0059	16095	1	1	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0060	16094	1	0	1	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0061	16090	1	0	0	0	0	1	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0062	16087	1	1	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0063	16095	1	1	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0064	16088	1	0	0	1	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0065	16088	1	0	0	1	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0066	16091	1	0	0	0	1	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0067	16088	1	0	1	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0068	16088	1	0	0	1	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0069	16088	1	0	0	0	1	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0070	16088	1	0	1	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0071	16088	1	0	1	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0072	16086	1	0	0	0	0	1	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0073	16086	1	0	1	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0074	16087	1	0	0	1	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0075	16089	1	0	1	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0076	16079	1	1	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0077	16094	1	1	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0078	16095	1	1	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0079	16094	1	1	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0080	16094	1	1	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0081	16095	1	1	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0082	16093	1	1	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0083	16094	1	1	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102