Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACTR2_chr2_65222831_65276253	0/0	t0022	2597	1	0	1	0	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0023	2599	1	1	0	0	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0024	2597	1	0	0	1	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0025	2599	1	0	1	0	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0026	2599	1	0	0	1	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0027	2599	1	0	0	1	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0028	2599	1	0	0	1	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0029	2599	1	1	0	0	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0030	2599	1	1	0	0	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0031	2599	1	0	0	1	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0032	2599	1	0	0	1	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR3B_chr7_152754752_152860378	1/1	t0001	957	179	51	39	60	7	20	copy fasta	ACTR3B	chr7	152754752	152860378
ACTR3B_chr7_152754752_152860378	0/0	t0002	957	110	25	14	56	3	12	copy fasta	ACTR3B	chr7	152754752	152860378
ACTR3B_chr7_152754752_152860378	0/0	t0003	957	8	8	0	0	0	0	copy fasta	ACTR3B	chr7	152754752	152860378
ACTR3B_chr7_152754752_152860378	0/0	t0004	957	3	3	0	0	0	0	copy fasta	ACTR3B	chr7	152754752	152860378
ACTR3B_chr7_152754752_152860378	0/0	t0005	957	2	2	0	0	0	0	copy fasta	ACTR3B	chr7	152754752	152860378
ACTR3B_chr7_152754752_152860378	0/0	t0006	957	2	0	0	2	0	0	copy fasta	ACTR3B	chr7	152754752	152860378
ACTR3B_chr7_152754752_152860378	0/0	t0007	957	2	0	0	2	0	0	copy fasta	ACTR3B	chr7	152754752	152860378
ACTR3B_chr7_152754752_152860378	0/0	t0008	957	1	1	0	0	0	0	copy fasta	ACTR3B	chr7	152754752	152860378
ACTR3B_chr7_152754752_152860378	0/0	t0009	957	1	0	1	0	0	0	copy fasta	ACTR3B	chr7	152754752	152860378
ACTR3B_chr7_152754752_152860378	0/0	t0010	957	1	0	1	0	0	0	copy fasta	ACTR3B	chr7	152754752	152860378
ACTR3B_chr7_152754752_152860378	0/0	t0011	957	1	0	1	0	0	0	copy fasta	ACTR3B	chr7	152754752	152860378
ACTR3C_chr7_150242212_150328545	1/1	t0001	525	237	73	36	92	7	27	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	0/0	t0002	525	50	11	6	25	3	5	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	0/0	t0003	525	3	0	0	3	0	0	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	0/0	t0004	525	2	2	0	0	0	0	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	0/0	t0005	525	1	1	0	0	0	0	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	0/0	t0006	525	1	1	0	0	0	0	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3_chr2_113885089_113967596	0/0	t0001	5332	103	19	11	61	0	12	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/1	t0002	5333	65	2	22	17	7	16	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	1/0	t0003	5333	54	4	6	41	1	1	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0004	5334	42	4	1	29	3	5	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0005	5332	16	6	2	8	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0006	5333	13	7	5	0	1	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0007	5332	11	11	0	0	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0008	5333	11	0	10	1	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0009	5333	11	10	1	0	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0010	5333	6	6	0	0	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0011	5338	5	0	0	5	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0012	5333	5	5	0	0	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0013	5332	5	4	1	0	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0014	5333	4	0	0	4	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0015	5328	4	4	0	0	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0016	5334	4	0	0	4	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0017	5332	4	0	0	3	0	1	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0018	5332	3	0	0	3	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0019	5333	2	0	1	1	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0020	5334	2	0	0	2	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0021	5332	2	0	0	2	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0022	5334	1	0	0	1	0	0	copy fasta	ACTR3	chr2	113885089	113967596