JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C1orf94_chr1_34171907_34224131	0/0	t0015	1254	3	3	0	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	t0016	1258	3	3	0	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	t0017	1254	3	0	0	2	1	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	t0018	1254	2	2	0	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	t0019	1254	2	0	0	1	0	1	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	t0020	1254	2	2	0	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	t0021	1254	1	0	0	1	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	t0022	1248	1	0	0	0	0	1	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	t0023	1248	1	0	0	1	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	t0024	1254	1	0	0	0	0	1	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	t0025	1248	1	0	1	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	t0026	1254	1	1	0	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	t0027	1248	1	0	0	1	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	t0028	1248	1	0	1	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	t0029	1254	1	0	0	1	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C20orf141_chr20_2809987_2820830	1/1	t0001	120	368	60	67	184	12	43	copy fasta	C20orf141	chr20	2809987	2820830
C20orf141_chr20_2809987_2820830	0/0	t0002	120	45	37	7	0	0	1	copy fasta	C20orf141	chr20	2809987	2820830
C20orf141_chr20_2809987_2820830	0/0	t0003	120	1	1	0	0	0	0	copy fasta	C20orf141	chr20	2809987	2820830
C20orf144_chr20_33657327_33668908	1/1	t0001	61	386	98	64	162	16	44	copy fasta	C20orf144	chr20	33657327	33668908
C20orf173_chr20_35521979_35534652	1/1	t0001	443	317	83	57	133	15	27	copy fasta	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	t0002	443	47	8	9	12	3	15	copy fasta	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	t0003	443	1	1	0	0	0	0	copy fasta	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	t0004	443	1	0	0	1	0	0	copy fasta	C20orf173	chr20	35521979	35534652
C20orf202_chr20_1198454_1214076	1/0	t0001	2107	201	13	40	116	11	20	copy fasta	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/1	t0002	2107	121	32	18	55	3	12	copy fasta	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	t0003	2107	46	32	9	0	1	4	copy fasta	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	t0004	2107	20	7	2	10	0	1	copy fasta	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	t0005	2107	13	1	8	0	1	3	copy fasta	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	t0006	2106	3	3	0	0	0	0	copy fasta	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	t0007	2107	2	2	0	0	0	0	copy fasta	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	t0008	2107	2	2	0	0	0	0	copy fasta	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	t0009	2107	2	2	0	0	0	0	copy fasta	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	t0010	2107	1	1	0	0	0	0	copy fasta	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	t0011	2107	1	0	0	1	0	0	copy fasta	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	t0012	2107	1	1	0	0	0	0	copy fasta	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	t0013	2122	1	1	0	0	0	0	copy fasta	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	t0014	2107	1	1	0	0	0	0	copy fasta	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	t0015	2107	1	0	1	0	0	0	copy fasta	C20orf202	chr20	1198454	1214076
C20orf203_chr20_32626625_32678941	0/0	t0001	4519	123	10	19	77	5	12	copy fasta	C20orf203	chr20	32626625	32678941
C20orf203_chr20_32626625_32678941	0/0	t0002	4519	51	8	16	15	2	10	copy fasta	C20orf203	chr20	32626625	32678941
C20orf203_chr20_32626625_32678941	0/0	t0003	4519	30	2	5	10	2	11	copy fasta	C20orf203	chr20	32626625	32678941
C20orf203_chr20_32626625_32678941	0/1	t0004	4519	24	0	13	0	3	7	copy fasta	C20orf203	chr20	32626625	32678941
C20orf203_chr20_32626625_32678941	0/0	t0005	4519	14	0	5	9	0	0	copy fasta	C20orf203	chr20	32626625	32678941
C20orf203_chr20_32626625_32678941	0/0	t0006	4519	13	10	3	0	0	0	copy fasta	C20orf203	chr20	32626625	32678941
C20orf203_chr20_32626625_32678941	0/0	t0007	4519	13	0	0	13	0	0	copy fasta	C20orf203	chr20	32626625	32678941
C20orf203_chr20_32626625_32678941	0/0	t0008	4519	10	5	2	2	0	1	copy fasta	C20orf203	chr20	32626625	32678941
C20orf203_chr20_32626625_32678941	0/0	t0009	4519	6	0	0	6	0	0	copy fasta	C20orf203	chr20	32626625	32678941
C20orf203_chr20_32626625_32678941	0/0	t0010	4519	5	3	2	0	0	0	copy fasta	C20orf203	chr20	32626625	32678941
C20orf203_chr20_32626625_32678941	0/0	t0011	4519	5	3	0	0	0	2	copy fasta	C20orf203	chr20	32626625	32678941
C20orf203_chr20_32626625_32678941	0/0	t0012	4519	3	3	0	0	0	0	copy fasta	C20orf203	chr20	32626625	32678941