JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF275_chrX_153329153_153357926	0/0	t0011	5131	2	2	0	0	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0012	5131	1	1	0	0	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0013	5131	1	1	0	0	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0014	5129	1	0	0	1	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0015	5130	1	0	1	0	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0016	5131	1	1	0	0	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0017	5132	1	0	0	1	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0018	5131	1	1	0	0	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0019	5131	1	1	0	0	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0020	5131	1	0	1	0	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0021	5131	1	1	0	0	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0022	5136	1	0	0	1	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0023	5131	1	1	0	0	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0024	5131	1	1	0	0	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0025	5138	1	0	0	1	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0026	5128	1	1	0	0	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0027	5131	1	1	0	0	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0028	5130	1	1	0	0	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0029	5131	1	0	0	1	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0030	5131	1	1	0	0	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0031	5131	1	1	0	0	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0032	5132	1	0	0	1	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0033	5131	1	1	0	0	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF276_chr16_89716537_89745925	0/1	t0001	2784	204	49	26	108	4	16	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	1/0	t0002	2784	38	2	24	2	5	4	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0003	2784	26	0	11	1	6	8	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0004	2785	20	4	3	12	0	1	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0005	2789	19	0	1	15	1	2	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0006	2784	15	12	2	0	1	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0007	2784	11	1	1	2	0	7	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0008	2784	8	7	1	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0009	2789	8	0	0	8	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0010	2783	8	7	1	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0011	2784	4	4	0	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0012	2784	3	0	0	0	0	3	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0013	2784	3	0	0	3	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0014	2790	3	0	0	3	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0015	2790	3	0	0	3	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0016	2785	2	2	0	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0017	2783	2	0	0	2	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0018	2784	2	0	0	2	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0019	2785	2	0	0	2	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0020	2784	2	1	1	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0021	2784	2	0	0	0	0	2	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0022	2784	1	0	1	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0023	2785	1	0	0	0	0	1	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0024	2783	1	0	0	0	1	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0025	2789	1	0	0	1	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0026	2784	1	0	0	0	0	1	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0027	2784	1	0	0	1	0	0	copy fasta	ZNF276	chr16	89716537	89745925