JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF276_chr16_89716537_89745925	0/0	t0028	2785	1	0	1	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0029	2784	1	1	0	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0030	2784	1	0	1	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0031	2784	1	0	1	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0032	2784	1	0	0	0	0	1	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0033	2785	1	1	0	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0034	2784	1	0	0	1	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0035	2785	1	0	1	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0036	2783	1	0	0	0	0	1	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0037	2784	1	0	0	1	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0038	2784	1	0	0	1	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0039	2784	1	0	0	1	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0040	2784	1	0	0	1	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0041	2784	1	0	0	1	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0042	2784	1	1	0	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0043	2784	1	0	0	1	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0044	2789	1	0	0	1	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0045	2784	1	0	0	1	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0046	2784	1	1	0	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0047	2785	1	0	0	0	0	1	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0048	2784	1	0	0	0	0	1	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0049	2784	1	0	0	0	0	1	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0050	2784	1	1	0	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0051	2784	1	1	0	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0052	2783	1	1	0	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0053	2785	1	1	0	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0054	2784	1	0	0	1	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0055	2784	1	1	0	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	t0056	2789	1	0	0	1	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF277_chr7_112201695_112348934	1/1	t0001	1228	249	76	53	85	6	27	copy fasta	ZNF277	chr7	112201695	112348934
ZNF277_chr7_112201695_112348934	0/0	t0002	1228	27	1	11	4	0	11	copy fasta	ZNF277	chr7	112201695	112348934
ZNF277_chr7_112201695_112348934	0/0	t0003	1228	2	2	0	0	0	0	copy fasta	ZNF277	chr7	112201695	112348934
ZNF277_chr7_112201695_112348934	0/0	t0004	1228	1	1	0	0	0	0	copy fasta	ZNF277	chr7	112201695	112348934
ZNF277_chr7_112201695_112348934	0/0	t0005	1228	1	0	0	1	0	0	copy fasta	ZNF277	chr7	112201695	112348934
ZNF280A_chr22_22508736_22525270	0/0	t0001	520	95	14	15	47	5	14	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	t0002	520	92	9	26	32	8	17	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	t0003	520	72	11	3	51	0	7	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	t0004	520	61	4	17	39	1	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/1	t0005	520	39	5	4	20	1	8	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	t0006	520	24	21	2	1	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	t0007	520	16	14	2	0	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	t0008	520	12	1	2	9	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	t0009	520	5	5	0	0	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	t0010	520	4	0	0	4	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	t0011	520	3	3	0	0	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	t0012	520	1	1	0	0	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	t0013	520	1	0	0	1	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	t0014	520	1	0	0	0	1	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	t0015	520	1	1	0	0	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	t0016	520	1	1	0	0	0	0	copy fasta	ZNF280A	chr22	22508736	22525270