JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF280A_chr22_22508736_22525270	0/0	t0017	520	1	0	1	0	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280B_chr22_22479421_22513742	0/1	t0001	3678	158	20	34	73	10	20	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0002	3657	45	7	6	20	2	10	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0003	3679	34	12	8	10	1	3	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0004	3677	9	7	2	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0005	3678	9	0	0	9	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0006	3678	7	6	1	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0007	3678	7	7	0	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0008	3678	6	0	2	4	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0009	3678	6	1	3	0	1	1	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0010	3657	5	0	0	5	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0011	3679	4	0	1	3	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0012	3663	4	4	0	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0013	3678	3	0	0	3	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0014	3679	3	3	0	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0015	3678	3	1	2	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0016	3657	3	3	0	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0017	3678	2	0	0	0	0	2	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0018	3677	2	0	0	2	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0019	3585	2	2	0	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0020	3679	2	0	0	1	0	1	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0021	3679	2	0	0	0	0	2	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0022	3679	2	2	0	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0023	3656	2	0	0	2	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0024	3657	2	2	0	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0025	3585	2	1	1	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0026	3657	1	0	0	1	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0027	3679	1	1	0	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0028	3678	1	1	0	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0029	3678	1	0	0	1	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0030	3677	1	1	0	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0031	3677	1	0	0	0	0	1	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0032	3678	1	1	0	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0033	3586	1	1	0	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0034	3678	1	0	0	1	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0035	3677	1	0	0	1	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0036	3678	1	0	0	0	1	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0037	3678	1	0	0	0	0	1	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0038	3678	1	0	0	1	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0039	3678	1	0	0	0	0	1	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0040	3678	1	0	0	0	1	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0041	3678	1	0	0	1	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0042	3678	1	1	0	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0043	3678	1	1	0	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0044	3679	1	1	0	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0045	3680	1	0	0	1	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0046	3679	1	0	0	1	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0047	3679	1	0	1	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0048	3663	1	1	0	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0049	3677	1	1	0	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742