JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF280B_chr22_22479421_22513742	0/0	t0050	3678	1	1	0	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0051	3678	1	1	0	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0052	3656	1	0	1	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0053	3658	1	0	0	1	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0054	3656	1	0	0	1	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0055	3657	1	0	0	1	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0056	3659	1	0	0	1	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0057	3678	1	0	1	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0058	3657	1	0	1	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0059	3678	1	1	0	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280B_chr22_22479421_22513742	0/0	t0060	3677	1	1	0	0	0	0	copy fasta	ZNF280B	chr22	22479421	22513742
ZNF280C_chrX_130197707_130273899	0/0	t0001	2425	140	40	24	52	7	17	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	1/1	t0002	2425	102	4	18	60	4	14	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	0/0	t0003	2425	5	4	1	0	0	0	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	0/0	t0004	2425	4	0	0	4	0	0	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	0/0	t0005	2425	3	3	0	0	0	0	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	0/0	t0006	2424	1	0	0	1	0	0	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	0/0	t0007	2425	1	1	0	0	0	0	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	0/0	t0008	2425	1	0	0	0	0	1	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	0/0	t0009	2425	1	0	0	1	0	0	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	0/0	t0010	2424	1	0	0	1	0	0	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	0/0	t0011	2425	1	0	0	1	0	0	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	0/0	t0012	2425	1	1	0	0	0	0	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	0/0	t0013	2425	1	1	0	0	0	0	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	0/0	t0014	2420	1	1	0	0	0	0	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	0/0	t0015	2425	1	0	0	1	0	0	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	0/0	t0016	2425	1	1	0	0	0	0	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	0/0	t0017	2425	1	1	0	0	0	0	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	0/0	t0018	2425	1	1	0	0	0	0	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	0/0	t0019	2426	1	0	0	1	0	0	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	0/0	t0020	2425	1	1	0	0	0	0	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	0/0	t0021	2413	1	1	0	0	0	0	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280C_chrX_130197707_130273899	0/0	t0022	2426	1	0	0	1	0	0	copy fasta	ZNF280C	chrX	130197707	130273899
ZNF280D_chr15_56625176_56738509	1/0	t0001	1460	231	73	34	91	5	27	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	t0002	1460	127	13	18	79	5	12	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/1	t0003	1460	21	0	18	0	0	2	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	t0004	1460	3	2	1	0	0	0	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	t0005	1460	1	0	0	1	0	0	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	t0006	1460	1	0	1	0	0	0	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	t0007	1460	1	0	0	0	0	1	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF280D_chr15_56625176_56738509	0/0	t0008	1460	1	0	0	1	0	0	copy fasta	ZNF280D	chr15	56625176	56738509
ZNF281_chr1_200399951_200415036	0/1	t0001	2178	217	45	36	113	6	16	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	t0002	2179	109	21	18	60	4	6	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	1/0	t0003	2177	60	4	24	8	7	16	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	t0004	2178	11	11	0	0	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	t0005	2178	6	0	0	6	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	t0006	2178	4	4	0	0	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	t0007	2176	4	0	1	0	1	2	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	t0008	2177	3	3	0	0	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	t0009	2179	2	0	0	2	0	0	copy fasta	ZNF281	chr1	200399951	200415036