JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF281_chr1_200399951_200415036	0/0	t0010	2178	2	2	0	0	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	t0011	2179	2	0	0	2	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	t0012	2177	2	0	0	1	0	1	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	t0013	2178	1	0	0	1	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	t0014	2178	1	0	0	0	0	1	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	t0015	2178	1	1	0	0	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	t0016	2178	1	1	0	0	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	t0017	2178	1	1	0	0	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	t0018	2178	1	0	1	0	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	t0019	2178	1	1	0	0	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	t0020	2177	1	0	0	1	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	t0021	2179	1	0	0	1	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	t0022	2178	1	0	0	1	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	t0023	2179	1	0	0	1	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF281_chr1_200399951_200415036	0/0	t0024	2178	1	0	0	1	0	0	copy fasta	ZNF281	chr1	200399951	200415036
ZNF282_chr7_149190546_149231238	1/1	t0001	1636	208	81	45	57	10	13	copy fasta	ZNF282	chr7	149190546	149231238
ZNF282_chr7_149190546_149231238	0/0	t0002	1636	21	0	8	0	2	11	copy fasta	ZNF282	chr7	149190546	149231238
ZNF282_chr7_149190546_149231238	0/0	t0003	1636	13	13	0	0	0	0	copy fasta	ZNF282	chr7	149190546	149231238
ZNF282_chr7_149190546_149231238	0/0	t0004	1636	2	2	0	0	0	0	copy fasta	ZNF282	chr7	149190546	149231238
ZNF282_chr7_149190546_149231238	0/0	t0005	1636	2	0	2	0	0	0	copy fasta	ZNF282	chr7	149190546	149231238
ZNF282_chr7_149190546_149231238	0/0	t0006	1636	1	1	0	0	0	0	copy fasta	ZNF282	chr7	149190546	149231238
ZNF282_chr7_149190546_149231238	0/0	t0007	1636	1	0	1	0	0	0	copy fasta	ZNF282	chr7	149190546	149231238
ZNF282_chr7_149190546_149231238	0/0	t0008	1636	1	1	0	0	0	0	copy fasta	ZNF282	chr7	149190546	149231238
ZNF282_chr7_149190546_149231238	0/0	t0009	1636	1	0	0	1	0	0	copy fasta	ZNF282	chr7	149190546	149231238
ZNF283_chr19_43822321_43857017	0/1	t0001	3642	90	18	13	36	5	17	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	1/0	t0002	3645	79	4	23	44	3	4	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0003	3646	46	13	12	14	2	5	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0004	3646	28	0	4	23	0	1	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0005	3645	22	9	2	11	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0006	3645	20	10	7	0	2	1	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0007	3646	19	0	8	6	2	3	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0008	3642	16	0	0	16	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0009	3642	14	14	0	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0010	3645	6	0	0	6	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0011	3642	5	5	0	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0012	3644	4	1	1	1	0	1	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0013	3645	4	2	1	0	0	1	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0014	3646	3	0	0	3	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0015	3646	3	3	0	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0016	3645	2	0	0	2	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0017	3642	2	1	0	1	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0018	3647	2	2	0	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0019	3647	2	2	0	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0020	3645	2	0	2	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0021	3642	2	2	0	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0022	3645	1	0	0	1	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0023	3646	1	0	0	1	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0024	3646	1	0	0	1	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0025	3646	1	0	0	1	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0026	3646	1	0	0	0	0	1	copy fasta	ZNF283	chr19	43822321	43857017