JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF283_chr19_43822321_43857017	0/0	t0027	3654	1	0	0	0	1	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0028	3645	1	1	0	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0029	3645	1	1	0	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0030	3646	1	0	0	1	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0031	3645	1	1	0	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0032	3645	1	1	0	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0033	3642	1	0	0	1	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0034	3642	1	0	0	1	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0035	3642	1	0	1	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0036	3642	1	0	0	0	0	1	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0037	3642	1	0	0	1	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0038	3646	1	0	0	1	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0039	3646	1	0	0	0	0	1	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0040	3646	1	1	0	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0041	3646	1	0	0	1	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0042	3646	1	0	0	1	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0043	3645	1	1	0	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0044	3642	1	0	0	0	1	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0045	3642	1	1	0	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	t0046	3646	1	1	0	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF284_chr19_44067159_44094613	0/1	t0001	2546	166	11	30	92	10	22	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0002	2554	82	4	15	51	3	9	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0003	2543	51	18	15	16	0	2	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0004	2547	21	3	5	10	1	2	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0005	2543	9	0	0	9	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0006	2545	9	9	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0007	2555	8	0	1	7	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0008	2549	5	4	1	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0009	2543	4	4	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0010	2545	4	0	2	2	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0011	2545	4	4	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0012	2556	4	0	0	3	0	1	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0013	2549	4	0	0	1	1	2	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0014	2550	4	3	1	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0015	2546	3	0	0	0	2	1	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0016	2544	3	3	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0017	2551	3	0	1	2	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0018	2547	3	0	0	3	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0019	2550	3	3	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0020	2548	2	2	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0021	2548	2	2	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0022	2550	2	2	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0023	2545	2	2	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0024	2546	2	2	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0025	2545	2	0	1	0	0	1	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0026	2554	2	1	1	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0027	2542	2	2	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0028	2553	2	0	1	1	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0029	2546	2	2	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0030	2555	2	0	0	2	0	0	copy fasta	ZNF284	chr19	44067159	44094613