JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF284_chr19_44067159_44094613	0/0	t0031	2545	2	2	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0032	2546	2	2	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0033	2554	2	2	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0034	2546	1	0	0	1	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0035	2513	1	1	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0036	2543	1	0	0	1	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0037	2538	1	1	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0038	2549	1	1	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0039	2549	1	0	0	0	1	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0040	2549	1	1	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0041	2544	1	0	0	1	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0042	2545	1	0	0	1	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0043	2552	1	0	0	1	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0044	2545	1	1	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0045	2552	1	0	0	1	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0046	2546	1	0	0	1	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0047	2547	1	0	0	1	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0048	2546	1	0	0	1	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0049	2547	1	1	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0050	2546	1	0	0	0	0	1	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0051	2554	1	0	1	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0052	2555	1	1	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0053	2548	1	0	0	1	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0054	2550	1	0	0	1	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0055	2543	1	1	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0056	2543	1	1	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0057	2547	1	1	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0058	2546	1	1	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0059	2554	1	0	1	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	1/0	t0060	2555	1	0	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0061	2549	1	0	0	1	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0062	2556	1	0	1	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0063	2557	1	0	0	1	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0064	2549	1	0	1	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0065	2542	1	0	0	0	0	1	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0066	2551	1	1	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	t0067	2552	1	1	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF285_chr19_44377298_44406608	0/0	t0001	4259	80	6	20	29	5	20	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	1/1	t0002	4259	78	4	24	34	7	7	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	t0003	4260	57	9	1	43	2	2	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	t0004	4259	49	4	9	32	1	3	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	t0005	4259	45	5	0	36	1	3	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	t0006	4261	16	0	4	5	2	5	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	t0007	4259	12	0	9	3	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	t0008	4260	9	2	1	4	0	2	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	t0009	4261	7	7	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	t0010	4259	6	5	1	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	t0011	4259	5	4	1	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	t0012	4261	5	5	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	t0013	4260	5	5	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608