JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF286A_chr17_15694752_15725787	0/0	t0046	3720	2	0	0	0	2	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0047	3722	2	0	0	2	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0048	3722	2	0	0	2	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0049	3720	2	2	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0050	3720	2	2	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0051	3721	2	0	0	1	0	1	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0052	3721	2	0	0	2	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0053	3722	2	0	0	1	0	1	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0054	3721	2	0	0	2	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0055	3721	2	2	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0056	3721	2	2	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0057	3720	2	0	2	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0058	3719	2	0	0	1	0	1	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0059	3721	2	0	2	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0060	3715	2	2	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0061	3721	2	2	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0062	3722	2	2	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0063	3722	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0064	3720	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0065	3719	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0066	3721	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0067	3721	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0068	3719	1	0	0	0	0	1	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0069	3721	1	0	0	0	1	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0070	3721	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0071	3721	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0072	3721	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0073	3720	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0074	3719	1	0	0	0	0	1	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0075	3721	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0076	3720	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0077	3722	1	0	0	0	0	1	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0078	3721	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0079	3722	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0080	3715	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0081	3719	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0082	3720	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0083	3720	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0084	3719	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0085	3720	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0086	3720	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0087	3720	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0088	3718	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0089	3718	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0090	3718	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0091	3718	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0092	3719	1	0	0	0	1	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0093	3720	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0094	3720	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0095	3721	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787