JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF286A_chr17_15694752_15725787	0/0	t0096	3721	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0097	3721	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0098	3722	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0099	3722	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0100	3722	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0101	3720	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0102	3722	1	0	0	0	0	1	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0103	3722	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0104	3721	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0105	3722	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0106	3723	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0107	3720	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0108	3720	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0109	3720	1	0	0	0	1	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0110	3720	1	0	0	0	1	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0111	3721	1	0	0	0	0	1	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0112	3720	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0113	3721	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0114	3722	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0115	3720	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0116	3720	1	0	0	0	0	1	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0117	3722	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0118	3720	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0119	3722	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0120	3722	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0121	3720	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0122	3720	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0123	3721	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0124	3721	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0125	3723	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0126	3721	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0127	3721	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0128	3721	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0129	3724	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0130	3722	1	0	0	0	0	1	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0131	3723	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0132	3721	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0133	3721	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0134	3724	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0135	3721	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0136	3720	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0137	3720	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0138	3721	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0139	3719	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0140	3719	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0141	3720	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0142	3721	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0143	3719	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0144	3719	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0145	3721	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787