JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF286A_chr17_15694752_15725787	0/0	t0146	3720	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0147	3720	1	0	0	0	0	1	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0148	3719	1	0	0	0	0	1	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0149	3721	1	0	0	0	0	1	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0150	3721	1	0	0	0	0	1	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0151	3721	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0152	3721	1	0	0	0	0	1	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0153	3720	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0154	3720	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0155	3719	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0156	3720	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0157	3719	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0158	3721	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0159	3721	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0160	3720	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0161	3719	1	0	0	0	0	1	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0162	3719	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0163	3720	1	0	0	0	0	1	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0164	3721	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0165	3719	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0166	3719	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0167	3721	1	0	0	0	0	1	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0168	3721	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0169	3719	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0170	3721	1	0	0	0	0	1	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0171	3721	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0172	3720	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0173	3721	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0174	3720	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0175	3722	1	0	0	0	0	1	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0176	3723	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0177	3721	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0178	3722	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0179	3720	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0180	3719	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0181	3721	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0182	3721	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0183	3721	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0184	3720	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0185	3721	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0186	3722	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0187	3723	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0188	3721	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0189	3719	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0190	3719	1	0	0	0	1	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0191	3719	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0192	3720	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0193	3719	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0194	3720	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0195	3720	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787