JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF292_chr6_87150565_87270943	0/0	t0010	4171	2	0	0	0	0	2	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	t0011	4171	2	0	0	2	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	t0012	4170	2	0	2	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	t0013	4171	2	2	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	t0014	4171	1	0	0	1	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	t0015	4169	1	0	0	1	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	t0016	4169	1	1	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	t0017	4165	1	1	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	t0018	4170	1	0	0	0	0	1	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	t0019	4170	1	1	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	t0020	4170	1	0	0	1	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	t0021	4171	1	0	1	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	t0022	4171	1	1	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	t0023	4172	1	0	1	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	t0024	4172	1	0	0	1	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	t0025	4172	1	1	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	t0026	4172	1	1	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	t0027	4170	1	0	0	0	0	1	copy fasta	ZNF292	chr6	87150565	87270943
ZNF296_chr19_45066500_45081478	1/1	t0001	207	403	95	84	167	14	41	copy fasta	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	t0002	203	7	0	0	7	0	0	copy fasta	ZNF296	chr19	45066500	45081478
ZNF296_chr19_45066500_45081478	0/0	t0003	207	2	1	0	0	0	1	copy fasta	ZNF296	chr19	45066500	45081478
ZNF2_chr2_95160809_95189317	0/0	t0001	2303	189	25	42	96	5	21	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	t0002	2302	56	39	10	5	0	2	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	1/0	t0003	2303	53	6	6	35	0	5	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/1	t0004	2302	27	2	3	15	0	6	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	t0005	2304	14	3	2	5	1	3	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	t0006	2304	6	2	3	1	0	0	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	t0007	2303	2	0	2	0	0	0	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	t0008	2303	2	0	0	2	0	0	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	t0009	2302	2	2	0	0	0	0	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	t0010	2302	2	0	0	2	0	0	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	t0011	2303	1	0	0	1	0	0	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	t0012	2304	1	0	1	0	0	0	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	t0013	2304	1	0	0	1	0	0	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	t0014	2302	1	1	0	0	0	0	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	t0015	2303	1	0	0	0	0	1	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	t0016	2302	1	1	0	0	0	0	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	t0017	2304	1	0	0	1	0	0	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	t0018	2304	1	0	0	1	0	0	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	t0019	2302	1	0	0	1	0	0	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	t0020	2303	1	0	0	0	0	1	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	t0021	2303	1	0	1	0	0	0	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	t0022	2302	1	1	0	0	0	0	copy fasta	ZNF2	chr2	95160809	95189317
ZNF2_chr2_95160809_95189317	0/0	t0023	2303	1	0	0	0	0	1	copy fasta	ZNF2	chr2	95160809	95189317
ZNF300_chr5_150889399_150909980	1/1	t0001	1444	321	58	59	147	16	39	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	t0002	1444	49	1	7	38	0	3	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	t0003	1444	13	13	0	0	0	0	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	t0004	1444	9	7	2	0	0	0	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	t0005	1445	6	6	0	0	0	0	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	t0006	1445	3	0	0	3	0	0	copy fasta	ZNF300	chr5	150889399	150909980