JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF304_chr19_57346271_57364898	0/0	t0018	2444	2	0	0	2	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0019	2444	2	2	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0020	2444	2	2	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0021	2444	2	2	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0022	2444	2	2	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0023	2444	1	1	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0024	2444	1	1	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0025	2445	1	1	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0026	2444	1	1	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0027	2444	1	0	1	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0028	2443	1	0	0	0	0	1	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0029	2443	1	0	0	1	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0030	2444	1	0	0	0	0	1	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0031	2444	1	0	0	1	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0032	2444	1	0	0	0	1	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0033	2444	1	1	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0034	2445	1	1	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0035	2443	1	1	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0036	2467	1	0	0	1	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0037	2444	1	0	0	1	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0038	2444	1	1	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0039	2445	1	1	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0040	2444	1	1	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0041	2444	1	1	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0042	2445	1	1	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF30_chr19_34921903_34950168	1/1	t0001	709	127	3	34	66	7	15	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	t0002	709	95	21	23	38	3	10	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	t0003	709	54	18	4	29	2	1	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	t0004	709	41	0	3	34	1	3	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	t0005	709	31	25	2	1	0	3	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	t0006	709	18	9	0	2	0	7	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	t0007	709	13	6	3	3	0	1	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	t0008	709	7	2	3	0	1	1	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	t0009	709	6	1	4	1	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	t0010	709	6	6	0	0	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	t0011	709	4	0	0	4	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	t0012	709	2	2	0	0	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	t0013	709	1	1	0	0	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	t0014	709	1	0	1	0	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	t0015	709	1	1	0	0	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	t0016	709	1	0	0	0	0	1	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	t0017	709	1	0	1	0	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	t0018	709	1	1	0	0	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	t0019	709	1	0	0	1	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	t0020	709	1	0	0	1	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF311_chr6_28989788_29010315	0/0	t0001	782	309	39	61	162	15	32	copy fasta	ZNF311	chr6	28989788	29010315
ZNF311_chr6_28989788_29010315	0/0	t0002	782	100	49	13	28	3	7	copy fasta	ZNF311	chr6	28989788	29010315
ZNF311_chr6_28989788_29010315	0/1	t0003	782	3	0	0	1	0	1	copy fasta	ZNF311	chr6	28989788	29010315
ZNF311_chr6_28989788_29010315	0/0	t0004	782	2	2	0	0	0	0	copy fasta	ZNF311	chr6	28989788	29010315
ZNF311_chr6_28989788_29010315	0/0	t0005	782	1	0	1	0	0	0	copy fasta	ZNF311	chr6	28989788	29010315