JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF311_chr6_28989788_29010315	0/0	t0006	782	1	0	0	1	0	0	copy fasta	ZNF311	chr6	28989788	29010315
ZNF311_chr6_28989788_29010315	0/0	t0007	782	1	0	1	0	0	0	copy fasta	ZNF311	chr6	28989788	29010315
ZNF316_chr7_6632318_6663279	0/0	t0001	4230	59	9	11	28	1	10	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0002	4228	52	10	6	31	0	5	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0003	4230	47	0	2	40	0	5	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	1/0	t0004	4229	21	1	8	6	4	1	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0005	4228	15	3	3	0	1	8	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0006	4229	12	11	1	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0007	4227	11	10	1	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0008	4229	11	1	3	5	2	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0009	4231	11	3	1	7	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0010	4227	8	0	0	8	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0011	4229	8	0	0	8	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0012	4230	6	2	0	2	0	2	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0013	4229	6	0	1	5	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0014	4231	6	0	0	6	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0015	4227	6	6	0	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0016	4232	5	0	2	0	3	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0017	4231	5	0	1	4	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0018	4230	5	0	0	5	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0019	4229	4	1	2	0	1	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0020	4230	4	0	4	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0021	4228	4	0	2	1	0	1	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0022	4227	4	4	0	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0023	4230	4	1	1	0	2	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0024	4229	4	0	0	3	0	1	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0025	4231	4	0	0	1	0	3	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0026	4228	3	3	0	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0027	4226	3	0	3	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0028	4230	3	1	0	0	0	2	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0029	4229	2	0	2	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0030	4229	2	0	1	0	0	1	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0031	4227	2	0	1	1	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0032	4230	2	1	1	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0033	4228	2	2	0	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0034	4233	2	0	2	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0035	4232	2	2	0	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0036	4226	2	0	0	2	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0037	4231	2	1	0	0	1	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0038	4229	2	2	0	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0039	4229	2	2	0	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0040	4232	2	0	1	0	0	1	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0041	4230	2	0	0	2	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0042	4232	2	0	0	1	0	1	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0043	4229	1	1	0	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0044	4231	1	0	0	1	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0045	4229	1	0	1	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0046	4231	1	0	0	1	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0047	4230	1	0	0	0	0	1	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0048	4229	1	0	1	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279