JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C20orf85_chr20_58145902_58166150	1/1	t0001	392	305	83	60	112	16	32	copy fasta	C20orf85	chr20	58145902	58166150
C20orf85_chr20_58145902_58166150	0/0	t0002	392	11	10	1	0	0	0	copy fasta	C20orf85	chr20	58145902	58166150
C20orf85_chr20_58145902_58166150	0/0	t0003	392	6	0	4	0	0	2	copy fasta	C20orf85	chr20	58145902	58166150
C20orf85_chr20_58145902_58166150	0/0	t0004	392	3	0	3	0	0	0	copy fasta	C20orf85	chr20	58145902	58166150
C20orf85_chr20_58145902_58166150	0/0	t0005	392	2	2	0	0	0	0	copy fasta	C20orf85	chr20	58145902	58166150
C20orf85_chr20_58145902_58166150	0/0	t0006	392	1	1	0	0	0	0	copy fasta	C20orf85	chr20	58145902	58166150
C20orf85_chr20_58145902_58166150	0/0	t0007	392	1	1	0	0	0	0	copy fasta	C20orf85	chr20	58145902	58166150
C20orf85_chr20_58145902_58166150	0/0	t0008	392	1	1	0	0	0	0	copy fasta	C20orf85	chr20	58145902	58166150
C20orf96_chr20_265863_295750	1/1	t0001	485	385	74	81	172	16	40	copy fasta	C20orf96	chr20	265863	295750
C20orf96_chr20_265863_295750	0/0	t0002	485	9	9	0	0	0	0	copy fasta	C20orf96	chr20	265863	295750
C20orf96_chr20_265863_295750	0/0	t0003	485	4	4	0	0	0	0	copy fasta	C20orf96	chr20	265863	295750
C20orf96_chr20_265863_295750	0/0	t0004	481	4	0	0	4	0	0	copy fasta	C20orf96	chr20	265863	295750
C20orf96_chr20_265863_295750	0/0	t0005	485	2	2	0	0	0	0	copy fasta	C20orf96	chr20	265863	295750
C20orf96_chr20_265863_295750	0/0	t0006	485	2	1	1	0	0	0	copy fasta	C20orf96	chr20	265863	295750
C20orf96_chr20_265863_295750	0/0	t0007	485	2	2	0	0	0	0	copy fasta	C20orf96	chr20	265863	295750
C20orf96_chr20_265863_295750	0/0	t0008	485	1	1	0	0	0	0	copy fasta	C20orf96	chr20	265863	295750
C20orf96_chr20_265863_295750	0/0	t0009	485	1	1	0	0	0	0	copy fasta	C20orf96	chr20	265863	295750
C21orf58_chr21_46296130_46328870	0/1	t0001	2005	124	24	34	46	6	13	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	t0002	2005	108	4	13	72	6	13	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	t0003	2005	54	40	5	0	3	6	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	t0004	2006	46	4	11	19	1	11	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	t0005	1998	13	6	5	0	1	1	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	t0006	2005	7	6	1	0	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	t0007	2004	5	1	3	0	1	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	t0008	2005	3	3	0	0	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	t0009	2005	2	2	0	0	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	t0010	2005	1	0	0	1	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	t0011	2006	1	0	0	1	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	t0012	2005	1	1	0	0	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	t0013	2005	1	0	0	0	0	1	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	t0014	2017	1	0	0	1	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	t0015	2005	1	0	0	1	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	t0016	2005	1	0	0	0	0	1	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	t0017	2005	1	0	0	0	0	1	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	t0018	2005	1	0	0	1	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	t0019	2005	1	0	0	1	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	t0020	2005	1	0	0	1	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	t0021	2005	1	1	0	0	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	t0022	2005	1	1	0	0	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	t0023	2005	1	1	0	0	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	t0024	2005	1	0	0	0	0	1	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	1/0	t0025	2002	1	0	0	0	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf62_chr21_32785673_32818703	0/0	t0001	3423	158	33	32	73	3	17	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/1	t0002	3422	62	35	9	6	2	9	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0003	3423	10	0	2	5	2	1	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0004	3423	10	0	6	0	1	3	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0005	3423	7	1	3	2	0	1	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0006	3422	5	5	0	0	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0007	3422	5	1	4	0	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0008	3423	5	0	0	5	0	0	copy fasta	C21orf62	chr21	32785673	32818703