JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF316_chr7_6632318_6663279	0/0	t0099	4232	1	0	0	0	0	1	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0100	4231	1	0	0	1	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0101	4229	1	1	0	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0102	4228	1	0	0	1	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0103	4230	1	0	1	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0104	4229	1	0	1	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	t0105	4228	1	0	1	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF317_chr19_9135397_9168413	1/1	t0001	2269	160	12	37	73	10	26	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	t0002	2268	114	36	21	49	1	7	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	t0003	2268	33	20	7	4	1	1	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	t0004	2268	33	4	6	19	3	1	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	t0005	2269	17	0	1	12	0	4	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	t0006	2268	7	6	1	0	0	0	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	t0007	2269	5	0	4	0	0	1	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	t0008	2268	5	5	0	0	0	0	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	t0009	2269	3	0	0	3	0	0	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	t0010	2269	2	0	0	2	0	0	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	t0011	2269	2	1	0	0	1	0	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	t0012	2268	2	2	0	0	0	0	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	t0013	2268	1	1	0	0	0	0	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	t0014	2269	1	1	0	0	0	0	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	t0015	2268	1	1	0	0	0	0	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	t0016	2269	1	0	1	0	0	0	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	t0017	2268	1	0	0	1	0	0	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	t0018	2269	1	0	0	0	0	1	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	t0019	2266	1	0	0	1	0	0	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	t0020	2268	1	1	0	0	0	0	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	t0021	2268	1	1	0	0	0	0	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	t0022	2268	1	0	0	0	0	1	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	t0023	2268	1	1	0	0	0	0	copy fasta	ZNF317	chr19	9135397	9168413
ZNF318_chr6_43331070_43374647	0/0	t0001	1371	155	49	25	64	2	15	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/1	t0002	1372	83	3	21	41	5	12	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	t0003	1372	13	5	3	4	0	1	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	t0004	1373	9	8	1	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	t0005	1373	8	0	1	7	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	t0006	1372	7	7	0	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	t0007	1372	6	0	0	6	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	t0008	1373	5	5	0	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	t0009	1371	5	5	0	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	1/0	t0010	1371	5	4	0	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	t0011	1367	4	0	3	0	0	1	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	t0012	1373	4	0	1	1	2	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	t0013	1371	4	0	0	4	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	t0014	1374	3	1	0	0	1	1	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	t0015	1373	2	2	0	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	t0016	1371	2	2	0	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	t0017	1375	1	0	0	0	0	1	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	t0018	1372	1	0	0	0	0	1	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	t0019	1371	1	1	0	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	t0020	1371	1	1	0	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647