JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF320_chr19_52871180_52902635	0/0	t0066	4800	1	1	0	0	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	t0067	4800	1	1	0	0	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	t0068	4800	1	0	0	1	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	t0069	4800	1	0	0	1	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	t0070	4789	1	0	1	0	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	t0071	4801	1	0	0	1	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	t0072	4800	1	0	0	0	1	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF322_chr6_26629383_26664746	0/0	t0001	3603	175	47	20	87	6	15	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	t0002	3602	69	22	9	28	2	8	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	t0003	3604	40	4	4	28	1	3	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	t0004	3602	38	10	15	2	1	10	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	t0005	3603	19	0	5	11	3	0	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	t0006	3603	6	0	0	6	0	0	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	t0007	3603	4	4	0	0	0	0	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	t0008	3604	4	0	2	2	0	0	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	t0009	3603	2	2	0	0	0	0	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	t0010	3602	2	2	0	0	0	0	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	t0011	3603	2	0	0	2	0	0	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	t0012	3603	2	2	0	0	0	0	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	t0013	3602	1	1	0	0	0	0	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	t0014	3603	1	0	0	1	0	0	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	t0015	3603	1	0	0	1	0	0	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	t0016	3603	1	0	1	0	0	0	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	t0017	3602	1	0	0	0	1	0	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	t0018	3603	1	0	0	1	0	0	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	t0019	3602	1	0	0	1	0	0	copy fasta	ZNF322	chr6	26629383	26664746
ZNF324B_chr19_58446622_58462833	1/0	t0001	1344	252	25	48	139	11	28	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	t0002	1344	95	56	19	9	1	10	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/1	t0003	1344	65	5	4	41	5	9	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	t0004	1344	6	0	5	0	1	0	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	t0005	1344	4	4	0	0	0	0	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	t0006	1344	3	1	2	0	0	0	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	t0007	1344	2	0	0	2	0	0	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	t0008	1344	2	0	2	0	0	0	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	t0009	1344	1	0	0	1	0	0	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	t0010	1344	1	0	0	1	0	0	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	t0011	1344	1	1	0	0	0	0	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	t0012	1344	1	1	0	0	0	0	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	t0013	1344	1	0	0	0	0	1	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	t0014	1344	1	1	0	0	0	0	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	t0015	1344	1	0	0	1	0	0	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	t0016	1344	1	0	0	1	0	0	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	t0017	1344	1	0	0	1	0	0	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324_chr19_58462080_58480436	0/0	t0001	3400	133	14	30	67	6	16	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	t0002	3400	46	3	9	28	5	1	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	1/0	t0003	3393	35	0	5	24	3	2	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	t0004	3398	30	6	8	9	1	6	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	t0005	3400	29	0	2	27	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	t0006	3401	18	1	4	13	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	t0007	3399	11	9	1	0	1	0	copy fasta	ZNF324	chr19	58462080	58480436