JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF324_chr19_58462080_58480436	0/0	t0058	3398	1	1	0	0	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	t0059	3393	1	0	0	1	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	t0060	3401	1	1	0	0	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	t0061	3401	1	1	0	0	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	t0062	3400	1	0	1	0	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	t0063	3400	1	0	0	0	0	1	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	t0064	3400	1	0	0	1	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	t0065	3400	1	0	0	0	1	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	t0066	3399	1	1	0	0	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	t0067	3398	1	1	0	0	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	t0068	3393	1	0	0	0	0	1	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	t0069	3393	1	1	0	0	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	t0070	3393	1	0	0	1	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	t0071	3399	1	1	0	0	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	t0072	3400	1	1	0	0	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	t0073	3399	1	0	0	1	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	t0074	3401	1	0	0	0	0	1	copy fasta	ZNF324	chr19	58462080	58480436
ZNF326_chr1_89990110_90040533	0/0	t0001	7979	57	5	20	22	4	6	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	1/1	t0002	7981	41	10	15	6	4	4	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0003	7980	15	0	4	7	1	3	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0004	7980	12	5	2	1	1	3	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0005	7975	7	7	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0006	7981	7	0	0	7	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0007	7980	4	4	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0008	7981	4	0	3	0	0	1	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0009	7979	4	4	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0010	7981	3	3	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0011	7980	3	1	1	1	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0012	7980	3	2	0	0	0	1	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0013	7980	3	3	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0014	7979	2	0	1	0	0	1	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0015	7980	2	0	0	0	0	2	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0016	7980	2	0	2	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0017	7981	2	0	0	0	0	2	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0018	7981	2	0	0	0	0	2	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0019	7980	2	0	0	2	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0020	7970	2	2	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0021	7967	2	2	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0022	7978	2	1	1	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0023	7980	2	0	0	2	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0024	7979	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0025	7977	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0026	7976	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0027	7980	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0028	7977	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0029	7978	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0030	7979	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0031	7980	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0032	7979	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0033	7978	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533