JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF326_chr1_89990110_90040533	0/0	t0034	7978	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0035	7977	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0036	7979	1	0	0	0	0	1	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0037	7979	1	0	0	0	1	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0038	7979	1	0	0	0	0	1	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0039	7979	1	0	0	0	0	1	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0040	7979	1	0	1	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0041	7979	1	0	0	1	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0042	7979	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0043	7980	1	0	0	1	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0044	7979	1	0	0	0	0	1	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0045	7978	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0046	7978	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0047	7978	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0048	7979	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0049	7978	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0050	7979	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0051	7981	1	0	0	0	0	1	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0052	7980	1	0	0	1	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0053	7979	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0054	7977	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0055	7980	1	0	0	1	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0056	7980	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0057	7981	1	0	0	0	1	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0058	7980	1	0	0	0	1	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0059	7981	1	0	0	0	0	1	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0060	7981	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0061	7980	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0062	7980	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0063	7982	1	0	0	0	0	1	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0064	7982	1	0	0	0	1	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0065	7982	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0066	7982	1	0	0	1	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0067	7971	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0068	7971	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0069	7971	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0070	7970	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0071	7978	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0072	7979	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0073	7981	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	t0074	7980	1	0	0	1	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF329_chr19_58121248_58155789	0/1	t0001	1876	168	39	34	59	13	22	copy fasta	ZNF329	chr19	58121248	58155789
ZNF329_chr19_58121248_58155789	1/0	t0002	1876	148	43	20	68	2	14	copy fasta	ZNF329	chr19	58121248	58155789
ZNF329_chr19_58121248_58155789	0/0	t0003	1876	86	0	12	58	3	13	copy fasta	ZNF329	chr19	58121248	58155789
ZNF329_chr19_58121248_58155789	0/0	t0004	1875	6	5	1	0	0	0	copy fasta	ZNF329	chr19	58121248	58155789
ZNF329_chr19_58121248_58155789	0/0	t0005	1876	6	5	1	0	0	0	copy fasta	ZNF329	chr19	58121248	58155789
ZNF329_chr19_58121248_58155789	0/0	t0006	1876	2	2	0	0	0	0	copy fasta	ZNF329	chr19	58121248	58155789
ZNF329_chr19_58121248_58155789	0/0	t0007	1876	1	0	0	1	0	0	copy fasta	ZNF329	chr19	58121248	58155789
ZNF329_chr19_58121248_58155789	0/0	t0008	1876	1	0	1	0	0	0	copy fasta	ZNF329	chr19	58121248	58155789
ZNF329_chr19_58121248_58155789	0/0	t0009	1876	1	1	0	0	0	0	copy fasta	ZNF329	chr19	58121248	58155789