JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF329_chr19_58121248_58155789	0/0	t0010	1876	1	0	1	0	0	0	copy fasta	ZNF329	chr19	58121248	58155789
ZNF329_chr19_58121248_58155789	0/0	t0011	1876	1	0	0	0	0	1	copy fasta	ZNF329	chr19	58121248	58155789
ZNF329_chr19_58121248_58155789	0/0	t0012	1876	1	1	0	0	0	0	copy fasta	ZNF329	chr19	58121248	58155789
ZNF32_chr10_43638862_43653881	1/1	t0001	338	437	92	72	212	18	41	copy fasta	ZNF32	chr10	43638862	43653881
ZNF32_chr10_43638862_43653881	0/0	t0002	338	1	0	0	0	0	1	copy fasta	ZNF32	chr10	43638862	43653881
ZNF330_chr4_141215895_141239697	0/0	t0001	929	145	44	16	69	3	13	copy fasta	ZNF330	chr4	141215895	141239697
ZNF330_chr4_141215895_141239697	1/1	t0002	929	140	32	31	47	10	18	copy fasta	ZNF330	chr4	141215895	141239697
ZNF330_chr4_141215895_141239697	0/0	t0003	929	44	0	11	28	2	3	copy fasta	ZNF330	chr4	141215895	141239697
ZNF330_chr4_141215895_141239697	0/0	t0004	929	4	3	1	0	0	0	copy fasta	ZNF330	chr4	141215895	141239697
ZNF330_chr4_141215895_141239697	0/0	t0005	929	4	3	1	0	0	0	copy fasta	ZNF330	chr4	141215895	141239697
ZNF330_chr4_141215895_141239697	0/0	t0006	929	3	1	1	0	1	0	copy fasta	ZNF330	chr4	141215895	141239697
ZNF330_chr4_141215895_141239697	0/0	t0007	929	3	3	0	0	0	0	copy fasta	ZNF330	chr4	141215895	141239697
ZNF330_chr4_141215895_141239697	0/0	t0008	929	3	3	0	0	0	0	copy fasta	ZNF330	chr4	141215895	141239697
ZNF330_chr4_141215895_141239697	0/0	t0009	929	1	0	0	1	0	0	copy fasta	ZNF330	chr4	141215895	141239697
ZNF330_chr4_141215895_141239697	0/0	t0010	911	1	1	0	0	0	0	copy fasta	ZNF330	chr4	141215895	141239697
ZNF330_chr4_141215895_141239697	0/0	t0011	929	1	0	1	0	0	0	copy fasta	ZNF330	chr4	141215895	141239697
ZNF330_chr4_141215895_141239697	0/0	t0012	1018	1	0	0	1	0	0	copy fasta	ZNF330	chr4	141215895	141239697
ZNF331_chr19_53533145_53585269	0/1	t0001	2674	218	40	28	117	9	23	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	1/0	t0002	2674	82	6	21	41	3	10	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0003	2674	41	14	7	15	2	3	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0004	2674	13	1	2	6	1	3	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0005	2674	5	3	2	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0006	2674	4	0	3	0	0	1	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0007	2674	3	3	0	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0008	2674	3	3	0	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0009	2674	3	0	2	0	0	1	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0010	2674	3	3	0	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0011	2674	3	3	0	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0012	2674	3	2	1	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0013	2674	2	0	0	2	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0014	2674	2	0	2	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0015	2672	2	2	0	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0016	2674	2	0	0	2	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0017	2674	2	2	0	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0018	2674	2	2	0	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0019	2674	2	0	2	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0020	2674	2	2	0	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0021	2674	1	1	0	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0022	2674	1	0	0	0	1	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0023	2674	1	0	0	1	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0024	2674	1	1	0	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0025	2674	1	1	0	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0026	2674	1	0	0	0	0	1	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0027	2674	1	1	0	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0028	2674	1	1	0	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0029	2674	1	1	0	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0030	2674	1	1	0	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0031	2674	1	0	0	1	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0032	2674	1	0	0	0	0	1	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0033	2674	1	0	0	1	0	0	copy fasta	ZNF331	chr19	53533145	53585269