JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF334_chr20_46494630_46518559	0/0	t0004	2725	13	0	0	13	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	t0005	2725	11	0	0	11	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	t0006	2725	6	0	0	6	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	t0007	2725	5	0	0	5	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	t0008	2725	3	3	0	0	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	t0009	2725	3	0	0	3	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	t0010	2725	2	2	0	0	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	t0011	2725	2	2	0	0	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	t0012	2725	2	2	0	0	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	t0013	2725	1	0	1	0	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	t0014	2725	1	0	0	1	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	t0015	2725	1	0	1	0	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	t0016	2725	1	1	0	0	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	t0017	2725	1	0	0	1	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	t0018	2725	1	0	1	0	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	t0019	2725	1	0	0	1	0	0	copy fasta	ZNF334	chr20	46494630	46518559
ZNF335_chr20_45943660_45977203	1/1	t0001	426	332	57	65	157	11	40	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	t0002	426	93	34	11	43	1	4	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	t0003	426	2	2	0	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	t0004	426	1	1	0	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF337_chr20_25668195_25701853	1/1	t0001	1982	212	48	52	69	9	32	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	t0002	1982	69	1	6	57	2	3	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	t0003	1982	42	15	4	23	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	t0004	1980	12	11	1	0	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	t0005	1982	7	6	1	0	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	t0006	1982	7	5	2	0	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	t0007	1982	5	3	1	0	1	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	t0008	1982	5	1	1	0	2	1	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	t0009	1982	3	0	0	3	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	t0010	1982	1	0	0	1	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	t0011	1982	1	0	0	1	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	t0012	1982	1	1	0	0	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	t0013	1982	1	1	0	0	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF33A_chr10_38005675_38065087	1/1	t0001	3681	246	63	49	106	5	21	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0002	3680	35	0	11	22	1	1	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0003	3681	16	0	0	16	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0004	3681	14	0	0	10	0	4	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0005	3681	8	1	5	0	2	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0006	3681	8	0	4	0	2	2	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0007	3681	6	0	1	5	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0008	3674	6	6	0	0	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0009	3681	5	4	1	0	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0010	3681	4	3	1	0	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0011	3681	3	0	0	0	1	2	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0012	3679	3	3	0	0	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0013	3681	2	0	0	2	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0014	3681	2	0	0	2	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0015	3681	2	0	0	2	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0016	3681	1	0	0	1	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0017	3681	1	0	0	0	1	0	copy fasta	ZNF33A	chr10	38005675	38065087