JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C21orf62_chr21_32785673_32818703	0/0	t0009	3422	4	0	2	0	0	2	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0010	3422	4	0	0	4	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0011	3423	4	4	0	0	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0012	3423	3	2	1	0	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0013	3422	3	2	0	0	0	1	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0014	3422	2	2	0	0	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0015	3423	2	1	0	1	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0016	3422	2	2	0	0	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0017	3422	2	0	2	0	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0018	3422	1	1	0	0	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0019	3422	1	0	1	0	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0020	3422	1	0	1	0	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0021	3422	1	0	0	1	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0022	3423	1	0	0	0	0	1	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0023	3423	1	0	0	0	0	1	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0024	3423	1	0	0	1	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0025	3423	1	0	1	0	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0026	3423	1	0	0	1	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0027	3423	1	0	0	1	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0028	3745	1	1	0	0	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0029	3423	1	0	0	1	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0030	3423	1	1	0	0	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0031	3423	1	1	0	0	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	t0032	3423	1	0	0	1	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf91_chr21_17783974_17824356	0/1	t0001	4492	98	10	21	48	6	12	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0002	4496	81	1	15	49	4	12	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	1/0	t0003	4503	35	0	11	14	3	6	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0004	4505	33	5	9	16	0	3	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0005	4494	15	13	1	1	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0006	4507	13	0	0	13	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0007	4506	11	9	1	0	0	1	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0008	4509	9	9	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0009	4492	8	0	1	7	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0010	4504	7	0	0	5	0	2	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0011	4498	7	0	4	3	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0012	4504	6	6	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0013	4492	6	0	0	5	0	1	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0014	4506	4	0	3	1	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0015	4508	4	4	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0016	4517	4	4	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0017	4507	4	0	1	2	0	1	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0018	4517	3	3	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0019	4515	3	3	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0020	4513	3	3	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0021	4511	3	1	1	0	0	1	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0022	4503	3	0	0	2	0	1	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0023	4503	3	3	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0024	4506	2	0	0	0	0	2	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0025	4502	2	2	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0026	4511	2	2	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356