JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF33A_chr10_38005675_38065087	0/0	t0018	3680	1	0	0	1	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0019	3681	1	0	0	1	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0020	3681	1	0	1	0	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0021	3681	1	1	0	0	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0022	3681	1	1	0	0	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0023	3681	1	0	0	1	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0024	3681	1	1	0	0	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0025	3681	1	1	0	0	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0026	3681	1	0	1	0	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0027	3681	1	1	0	0	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0028	3681	1	0	0	1	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0029	3681	1	0	0	0	0	1	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0030	3681	1	1	0	0	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	t0031	3681	1	0	0	0	0	1	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33B_chr10_42584109_42643570	0/0	t0001	3646	102	8	9	66	4	15	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/1	t0002	3646	68	5	16	37	5	4	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	1/0	t0003	3646	59	21	22	4	0	11	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0004	3646	26	1	0	22	0	3	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0005	3632	22	7	0	14	0	1	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0006	3628	20	17	3	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0007	3628	17	1	4	11	1	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0008	3628	10	1	4	0	3	2	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0009	3646	8	8	0	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0010	3626	5	5	0	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0011	3646	4	0	2	0	1	1	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0012	3646	4	0	1	3	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0013	3646	4	0	0	4	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0014	3628	3	3	0	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0015	3628	3	2	1	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0016	3628	2	1	1	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0017	3646	2	2	0	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0018	3632	2	0	0	2	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0019	3645	2	0	2	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0020	3646	2	0	2	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0021	3646	1	0	0	0	0	1	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0022	3646	1	0	1	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0023	3633	1	1	0	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0024	3646	1	0	0	0	0	1	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0025	3647	1	1	0	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0026	3646	1	1	0	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0027	3646	1	0	0	0	1	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0028	3646	1	1	0	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0029	3646	1	1	0	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0030	3646	1	0	0	1	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0031	3646	1	0	0	1	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0032	3632	1	0	0	1	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0033	3628	1	0	1	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0034	3632	1	1	0	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0035	3646	1	0	0	0	1	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	t0036	3646	1	0	1	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570