JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF33B_chr10_42584109_42643570	0/0	t0037	3646	1	0	0	0	0	1	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF341_chr20_33726996_33797269	1/1	t0001	779	242	36	44	109	15	36	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	t0002	779	62	37	11	10	1	3	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	t0003	779	7	6	1	0	0	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	t0004	779	4	4	0	0	0	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	t0005	779	3	3	0	0	0	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	t0006	779	3	0	2	1	0	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	t0007	779	2	2	0	0	0	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	t0008	779	2	2	0	0	0	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	t0009	779	1	0	0	1	0	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	t0010	779	1	1	0	0	0	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	t0011	779	1	0	0	1	0	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	t0012	779	1	0	0	1	0	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	t0013	779	1	0	0	0	0	1	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	t0014	779	1	0	0	1	0	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	t0015	779	1	1	0	0	0	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF343_chr20_2476817_2513915	0/1	t0001	1616	128	13	29	66	8	11	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0002	1616	68	12	7	39	0	10	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0003	1616	42	3	11	15	5	8	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0004	1616	22	19	3	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0005	1616	21	4	0	15	0	2	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0006	1616	20	3	3	14	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0007	1616	13	7	1	4	0	1	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0008	1616	11	10	1	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0009	1616	11	4	2	0	1	4	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0010	1616	10	0	1	9	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	1/0	t0011	1616	9	2	1	0	1	4	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0012	1616	8	0	2	6	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0013	1616	5	1	1	3	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0014	1616	4	1	1	2	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0015	1616	4	0	0	4	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0016	1616	3	1	0	0	1	1	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0017	1616	3	3	0	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0018	1616	2	2	0	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0019	1616	2	2	0	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0020	1616	2	1	0	0	0	1	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0021	1616	2	0	0	2	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0022	1616	2	0	2	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0023	1616	1	1	0	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0024	1616	1	1	0	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0025	1616	1	0	1	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0026	1616	1	1	0	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0027	1616	1	1	0	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0028	1616	1	1	0	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0029	1616	1	1	0	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0030	1616	1	0	0	0	0	1	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0031	1616	1	0	0	1	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0032	1616	1	0	0	1	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0033	1616	1	0	0	1	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0034	1616	1	1	0	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915