JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF343_chr20_2476817_2513915	0/0	t0035	1616	1	0	0	1	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0036	1616	1	1	0	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0037	1616	1	1	0	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0038	1616	1	1	0	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0039	1616	1	0	0	1	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	t0040	1616	1	0	0	0	0	1	copy fasta	ZNF343	chr20	2476817	2513915
ZNF345_chr19_36845876_36884575	0/0	t0001	1493	183	14	36	108	6	19	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/0	t0002	1492	80	31	5	33	1	10	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	1/1	t0003	1493	71	18	24	15	3	9	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/0	t0004	1492	26	20	6	0	0	0	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/0	t0005	1493	4	0	0	3	0	1	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/0	t0006	1492	3	1	2	0	0	0	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/0	t0007	1493	3	3	0	0	0	0	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/0	t0008	1492	2	2	0	0	0	0	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/0	t0009	1492	1	1	0	0	0	0	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/0	t0010	1492	1	1	0	0	0	0	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/0	t0011	1493	1	0	0	0	0	1	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/0	t0012	1493	1	1	0	0	0	0	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/0	t0013	1493	1	0	0	1	0	0	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/0	t0014	1493	1	0	1	0	0	0	copy fasta	ZNF345	chr19	36845876	36884575
ZNF346_chr5_177017696_177072985	0/0	t0001	3430	116	8	31	55	5	17	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0002	3432	98	12	15	60	4	7	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/1	t0003	3430	34	21	7	3	0	2	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0004	3436	31	14	4	7	2	4	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0005	3434	11	9	2	0	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0006	3428	7	5	0	1	0	1	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0007	3432	7	0	0	7	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0008	3434	4	0	3	1	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0009	3430	2	0	2	0	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0010	3432	2	2	0	0	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0011	3430	2	2	0	0	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0012	3430	2	0	0	0	0	2	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0013	3432	2	0	1	0	1	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0014	3430	2	2	0	0	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0015	3430	2	0	0	0	0	2	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0016	3430	2	0	0	2	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0017	3428	2	2	0	0	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0018	3430	2	0	0	2	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0019	3428	1	1	0	0	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0020	3430	1	1	0	0	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0021	3432	1	0	0	1	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0022	3432	1	0	0	1	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0023	3430	1	0	0	1	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0024	3436	1	1	0	0	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0025	3434	1	0	0	1	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0026	3430	1	0	0	1	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0027	3430	1	0	0	1	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0028	3430	1	0	0	0	0	1	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0029	3430	1	0	0	1	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	1/0	t0030	3430	1	0	0	0	0	0	copy fasta	ZNF346	chr5	177017696	177072985