JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF346_chr5_177017696_177072985	0/0	t0031	3430	1	0	0	1	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0032	3430	1	0	0	1	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0033	3434	1	1	0	0	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0034	3436	1	1	0	0	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0035	3436	1	0	1	0	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0036	3430	1	1	0	0	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0037	3436	1	1	0	0	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0038	3430	1	1	0	0	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0039	3436	1	1	0	0	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF346_chr5_177017696_177072985	0/0	t0040	3432	1	0	0	1	0	0	copy fasta	ZNF346	chr5	177017696	177072985
ZNF347_chr19_53129935_53164053	0/0	t0001	5447	18	0	6	10	1	1	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0002	5447	13	0	4	6	0	3	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0003	5448	10	2	4	4	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0004	5448	9	0	3	3	1	2	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0005	5447	9	0	0	5	3	1	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0006	5447	9	0	1	5	1	2	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0007	5459	6	0	1	5	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0008	5447	6	0	0	6	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0009	5449	6	3	1	2	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0010	5448	5	0	2	0	0	3	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0011	5447	5	0	1	4	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0012	5448	4	0	0	2	1	1	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0013	5449	4	0	1	3	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0014	5449	4	1	0	2	0	1	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0015	5449	4	3	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0016	5449	4	0	0	4	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0017	5445	3	0	1	0	2	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0018	5450	3	0	2	0	0	1	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0019	5449	3	1	1	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0020	5449	3	0	0	3	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0021	5449	3	0	1	2	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0022	5449	3	0	1	1	0	1	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0023	5463	3	0	0	3	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0024	5465	3	0	0	3	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0025	5461	3	0	2	0	0	1	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0026	5449	3	0	0	3	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0027	5447	3	0	0	3	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0028	5441	2	0	2	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0029	5443	2	0	2	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0030	5443	2	0	2	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0031	5447	2	0	1	0	0	1	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0032	5445	2	0	0	0	2	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0033	5465	2	2	0	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0034	5457	2	2	0	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0035	5448	2	0	0	0	0	2	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0036	5450	2	0	2	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0037	5448	2	0	0	2	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0038	5450	2	0	0	2	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0039	5449	2	0	0	2	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0040	5449	2	2	0	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053