JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
ZNF347_chr19_53129935_53164053	0/0	t0091	5481	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0092	5479	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0093	5477	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0094	5439	1	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0095	5460	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0096	5460	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0097	5482	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0098	5443	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0099	5441	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0100	5441	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0101	5455	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0102	5451	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0103	5451	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0104	5449	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0105	5449	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0106	5449	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0107	5449	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0108	5479	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0109	5449	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0110	5450	1	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0111	5458	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0112	5448	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0113	5452	1	0	0	0	1	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0114	5442	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0115	5450	1	0	0	0	1	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0116	5450	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0117	5450	1	0	0	0	1	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0118	5452	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0119	5449	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0120	5449	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0121	5451	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0122	5446	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0123	5447	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0124	5447	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0125	5445	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0126	5451	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0127	5449	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0128	5451	1	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0129	5448	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0130	5443	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0131	5443	1	0	0	0	1	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0132	5441	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0133	5451	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0134	5443	1	0	0	0	1	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0135	5445	1	0	0	0	1	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0136	5445	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0137	5457	1	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0138	5447	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0139	5447	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0140	5455	1	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053