JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
ZNF347_chr19_53129935_53164053	0/0	t0141	5447	1	0	0	0	1	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0142	5447	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0143	5460	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0144	5463	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0145	5464	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0146	5465	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0147	5465	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0148	5461	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0149	5461	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0150	5463	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0151	5460	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0152	5456	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0153	5464	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0154	5439	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0155	5451	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0156	5439	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	1/0	t0157	5465	1	0	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0158	5457	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0159	5451	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0160	5459	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0161	5455	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0162	5453	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0163	5463	1	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0164	5477	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0165	5461	1	0	0	0	1	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0166	5465	1	0	0	0	1	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0167	5459	1	0	0	0	1	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0168	5465	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0169	5461	1	0	0	0	1	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0170	5465	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0171	5463	1	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0172	5459	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0173	5461	1	0	0	0	1	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0174	5461	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0175	5461	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0176	5461	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0177	5461	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0178	5461	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0179	5465	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0180	5465	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0181	5448	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0182	5447	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0183	5450	1	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0184	5447	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0185	5449	1	0	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0186	5475	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0187	5443	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0188	5447	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0189	5459	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0190	5455	1	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053