JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF347_chr19_53129935_53164053	0/0	t0191	5465	1	1	0	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0192	5449	1	1	0	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0193	5445	1	1	0	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0194	5443	1	0	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0195	5445	1	0	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0196	5483	1	0	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0197	5448	1	0	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0198	5449	1	0	0	0	0	1	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0199	5453	1	0	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0200	5451	1	1	0	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0201	5449	1	1	0	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0202	5453	1	1	0	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0203	5451	1	1	0	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/1	t0204	5451	1	0	0	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0205	5463	1	0	0	0	0	1	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0206	5447	1	0	0	0	0	1	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0207	5443	1	0	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0208	5447	1	0	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0209	5447	1	0	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0210	5459	1	1	0	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0211	5457	1	1	0	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0212	5459	1	0	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0213	5475	1	0	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0214	5463	1	0	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0215	5463	1	0	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0216	5449	1	0	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	t0217	5447	1	0	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF34_chr8_144767224_144792317	1/1	t0001	1189	359	56	72	182	13	34	copy fasta	ZNF34	chr8	144767224	144792317
ZNF34_chr8_144767224_144792317	0/0	t0002	1184	23	22	1	0	0	0	copy fasta	ZNF34	chr8	144767224	144792317
ZNF34_chr8_144767224_144792317	0/0	t0003	1189	8	7	1	0	0	0	copy fasta	ZNF34	chr8	144767224	144792317
ZNF34_chr8_144767224_144792317	0/0	t0004	1189	5	1	3	0	1	0	copy fasta	ZNF34	chr8	144767224	144792317
ZNF34_chr8_144767224_144792317	0/0	t0005	1189	4	4	0	0	0	0	copy fasta	ZNF34	chr8	144767224	144792317
ZNF34_chr8_144767224_144792317	0/0	t0006	1189	3	0	2	0	1	0	copy fasta	ZNF34	chr8	144767224	144792317
ZNF34_chr8_144767224_144792317	0/0	t0007	1184	2	2	0	0	0	0	copy fasta	ZNF34	chr8	144767224	144792317
ZNF34_chr8_144767224_144792317	0/0	t0008	1189	2	2	0	0	0	0	copy fasta	ZNF34	chr8	144767224	144792317
ZNF34_chr8_144767224_144792317	0/0	t0009	1184	2	2	0	0	0	0	copy fasta	ZNF34	chr8	144767224	144792317
ZNF34_chr8_144767224_144792317	0/0	t0010	1136	1	0	0	1	0	0	copy fasta	ZNF34	chr8	144767224	144792317
ZNF34_chr8_144767224_144792317	0/0	t0011	1189	1	1	0	0	0	0	copy fasta	ZNF34	chr8	144767224	144792317
ZNF34_chr8_144767224_144792317	0/0	t0012	1189	1	0	0	1	0	0	copy fasta	ZNF34	chr8	144767224	144792317
ZNF34_chr8_144767224_144792317	0/0	t0013	1189	1	0	0	0	1	0	copy fasta	ZNF34	chr8	144767224	144792317
ZNF34_chr8_144767224_144792317	0/0	t0014	1189	1	1	0	0	0	0	copy fasta	ZNF34	chr8	144767224	144792317
ZNF34_chr8_144767224_144792317	0/0	t0015	1189	1	0	1	0	0	0	copy fasta	ZNF34	chr8	144767224	144792317
ZNF350_chr19_51959340_51991840	1/1	t0001	757	261	81	50	96	9	23	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	t0002	757	62	3	5	37	5	12	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	t0003	757	33	11	4	11	0	7	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	t0004	757	4	0	3	1	0	0	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	t0005	757	1	1	0	0	0	0	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	t0006	757	1	0	0	1	0	0	copy fasta	ZNF350	chr19	51959340	51991840
ZNF354A_chr5_178706512_178735659	1/1	t0001	704	287	79	60	110	12	24	copy fasta	ZNF354A	chr5	178706512	178735659
ZNF354A_chr5_178706512_178735659	0/0	t0002	716	72	4	17	36	4	11	copy fasta	ZNF354A	chr5	178706512	178735659