JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF354A_chr5_178706512_178735659	0/0	t0003	716	32	4	1	23	0	4	copy fasta	ZNF354A	chr5	178706512	178735659
ZNF354A_chr5_178706512_178735659	0/0	t0004	704	7	0	1	4	0	2	copy fasta	ZNF354A	chr5	178706512	178735659
ZNF354A_chr5_178706512_178735659	0/0	t0005	716	6	0	0	4	0	2	copy fasta	ZNF354A	chr5	178706512	178735659
ZNF354A_chr5_178706512_178735659	0/0	t0006	704	4	3	1	0	0	0	copy fasta	ZNF354A	chr5	178706512	178735659
ZNF354A_chr5_178706512_178735659	0/0	t0007	704	1	0	1	0	0	0	copy fasta	ZNF354A	chr5	178706512	178735659
ZNF354A_chr5_178706512_178735659	0/0	t0008	716	1	0	0	0	0	1	copy fasta	ZNF354A	chr5	178706512	178735659
ZNF354A_chr5_178706512_178735659	0/0	t0009	705	1	1	0	0	0	0	copy fasta	ZNF354A	chr5	178706512	178735659
ZNF354A_chr5_178706512_178735659	0/0	t0010	716	1	1	0	0	0	0	copy fasta	ZNF354A	chr5	178706512	178735659
ZNF354A_chr5_178706512_178735659	0/0	t0011	704	1	0	1	0	0	0	copy fasta	ZNF354A	chr5	178706512	178735659
ZNF354A_chr5_178706512_178735659	0/0	t0012	715	1	0	0	1	0	0	copy fasta	ZNF354A	chr5	178706512	178735659
ZNF354B_chr5_178854953_178890020	1/1	t0001	956	275	48	46	133	11	35	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	t0002	956	38	3	7	19	4	5	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	t0003	956	32	0	6	26	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	t0004	956	28	18	8	0	1	1	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	t0005	956	8	8	0	0	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	t0006	956	5	5	0	0	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	t0007	956	3	0	0	3	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	t0008	956	3	0	0	3	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	t0009	956	2	0	1	0	0	1	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	t0010	956	2	2	0	0	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	t0011	956	2	2	0	0	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	t0012	956	2	0	1	1	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	t0013	956	2	1	1	0	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	t0014	956	1	0	0	1	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	t0015	956	1	1	0	0	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	t0016	956	1	0	0	1	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	t0017	956	1	0	0	1	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354C_chr5_179055373_179088977	0/0	t0001	4228	97	0	26	57	5	9	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0002	4228	93	4	13	64	3	9	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0003	4229	54	2	19	19	5	9	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0004	4226	51	20	1	28	0	2	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	1/1	t0005	4229	23	13	2	4	1	1	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0006	4228	17	17	0	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0007	4224	9	8	1	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0008	4228	8	1	7	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0009	4227	8	1	1	0	0	6	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0010	4229	5	0	0	5	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0011	4226	5	5	0	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0012	4228	5	0	0	5	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0013	4226	5	0	0	5	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0014	4225	4	0	0	4	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0015	4227	4	0	0	0	0	4	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0016	4228	4	0	0	4	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0017	4226	4	0	0	4	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0018	4224	3	3	0	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0019	4228	3	0	3	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0020	4226	3	3	0	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0021	4230	3	2	1	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0022	4229	2	2	0	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0023	4228	2	0	0	2	0	0	copy fasta	ZNF354C	chr5	179055373	179088977