JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF354C_chr5_179055373_179088977	0/0	t0024	4226	2	1	1	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0025	4227	2	1	1	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0026	4229	1	0	1	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0027	4228	1	0	1	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0028	4229	1	1	0	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0029	4227	1	1	0	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0030	4228	1	1	0	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0031	4228	1	0	0	0	0	1	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0032	4228	1	1	0	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0033	4227	1	1	0	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0034	4228	1	0	0	1	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0035	4227	1	1	0	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0036	4228	1	0	0	1	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0037	4228	1	0	0	0	0	1	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0038	4228	1	0	0	1	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0039	4228	1	0	0	1	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0040	4226	1	1	0	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0041	4226	1	1	0	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0042	4226	1	1	0	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0043	4228	1	0	0	1	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0044	4228	1	0	0	0	0	1	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0045	4228	1	0	0	0	0	1	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0046	4228	1	0	0	1	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0047	4227	1	1	0	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0048	4228	1	0	0	1	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	t0049	4226	1	1	0	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF358_chr19_7511103_7526025	1/1	t0001	262	423	94	82	182	16	47	copy fasta	ZNF358	chr19	7511103	7526025
ZNF358_chr19_7511103_7526025	0/0	t0002	262	1	0	0	0	0	1	copy fasta	ZNF358	chr19	7511103	7526025
ZNF35_chr3_44643732_44665791	1/1	t0001	1075	268	70	56	91	13	36	copy fasta	ZNF35	chr3	44643732	44665791
ZNF35_chr3_44643732_44665791	0/0	t0002	1075	48	25	16	0	3	4	copy fasta	ZNF35	chr3	44643732	44665791
ZNF35_chr3_44643732_44665791	0/0	t0003	1075	4	0	4	0	0	0	copy fasta	ZNF35	chr3	44643732	44665791
ZNF35_chr3_44643732_44665791	0/0	t0004	1075	2	2	0	0	0	0	copy fasta	ZNF35	chr3	44643732	44665791
ZNF35_chr3_44643732_44665791	0/0	t0005	1075	1	0	0	0	0	1	copy fasta	ZNF35	chr3	44643732	44665791
ZNF35_chr3_44643732_44665791	0/0	t0006	1075	1	0	0	1	0	0	copy fasta	ZNF35	chr3	44643732	44665791
ZNF35_chr3_44643732_44665791	0/0	t0007	1075	1	0	0	0	0	1	copy fasta	ZNF35	chr3	44643732	44665791
ZNF35_chr3_44643732_44665791	0/0	t0008	1075	1	1	0	0	0	0	copy fasta	ZNF35	chr3	44643732	44665791
ZNF362_chr1_33251492_33305719	0/0	t0001	1927	152	60	22	46	4	20	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	1/1	t0002	1925	111	15	27	59	2	6	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	t0003	1924	48	1	6	26	4	11	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	t0004	1925	10	7	1	1	0	1	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	t0005	1924	4	0	0	4	0	0	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	t0006	1925	3	3	0	0	0	0	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	t0007	1924	2	0	0	0	0	2	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	t0008	1925	2	0	2	0	0	0	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	t0009	1925	2	0	0	2	0	0	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	t0010	1927	2	2	0	0	0	0	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	t0011	1925	2	0	0	0	0	2	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	t0012	1925	1	1	0	0	0	0	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	t0013	1925	1	1	0	0	0	0	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	t0014	1925	1	0	1	0	0	0	copy fasta	ZNF362	chr1	33251492	33305719