JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C21orf91_chr21_17783974_17824356	0/0	t0027	4519	2	2	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0028	4523	2	2	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0029	4496	2	0	0	0	0	2	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0030	4500	2	0	1	1	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0031	4501	2	0	0	0	0	2	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0032	4505	2	0	0	2	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0033	4492	1	0	0	1	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0034	4492	1	1	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0035	4492	1	0	0	1	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0036	4502	1	0	0	0	0	1	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0037	4498	1	0	0	1	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0038	4510	1	0	1	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0039	4508	1	0	1	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0040	4500	1	1	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0041	4492	1	0	0	1	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0042	4494	1	1	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0043	4492	1	0	0	0	1	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0044	4504	1	0	1	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0045	4492	1	1	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0046	4492	1	0	0	1	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0047	4506	1	1	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0048	4507	1	0	0	1	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0049	4511	1	1	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0050	4509	1	1	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0051	4498	1	0	0	1	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0052	4488	1	0	0	1	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0053	4509	1	0	0	1	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0054	4500	1	0	0	0	0	1	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0055	4503	1	1	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0056	4493	1	1	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0057	4503	1	1	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0058	4505	1	0	1	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0059	4503	1	0	0	1	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0060	4493	1	0	0	1	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0061	4503	1	0	0	1	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0062	4503	1	0	0	1	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0063	4508	1	1	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0064	4503	1	0	1	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	t0065	4519	1	1	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C22orf15_chr22_23757990_23770863	1/1	t0001	449	371	69	72	168	15	45	copy fasta	C22orf15	chr22	23757990	23770863
C22orf15_chr22_23757990_23770863	0/0	t0002	449	22	2	2	15	1	2	copy fasta	C22orf15	chr22	23757990	23770863
C22orf15_chr22_23757990_23770863	0/0	t0003	449	20	19	1	0	0	0	copy fasta	C22orf15	chr22	23757990	23770863
C22orf15_chr22_23757990_23770863	0/0	t0004	449	8	0	4	4	0	0	copy fasta	C22orf15	chr22	23757990	23770863
C22orf15_chr22_23757990_23770863	0/0	t0005	449	7	6	1	0	0	0	copy fasta	C22orf15	chr22	23757990	23770863
C22orf15_chr22_23757990_23770863	0/0	t0006	449	3	0	0	3	0	0	copy fasta	C22orf15	chr22	23757990	23770863
C22orf15_chr22_23757990_23770863	0/0	t0007	449	1	0	0	0	0	1	copy fasta	C22orf15	chr22	23757990	23770863
C22orf23_chr22_37938050_37958601	1/1	t0001	1289	329	59	73	145	17	33	copy fasta	C22orf23	chr22	37938050	37958601
C22orf23_chr22_37938050_37958601	0/0	t0002	1289	11	10	1	0	0	0	copy fasta	C22orf23	chr22	37938050	37958601
C22orf23_chr22_37938050_37958601	0/0	t0003	1289	7	7	0	0	0	0	copy fasta	C22orf23	chr22	37938050	37958601
C22orf23_chr22_37938050_37958601	0/0	t0004	1289	7	7	0	0	0	0	copy fasta	C22orf23	chr22	37938050	37958601