JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF362_chr1_33251492_33305719	0/0	t0015	1924	1	1	0	0	0	0	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	t0016	1927	1	0	1	0	0	0	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	t0017	1927	1	0	0	0	0	1	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	t0018	1927	1	0	0	0	0	1	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	t0019	1927	1	1	0	0	0	0	copy fasta	ZNF362	chr1	33251492	33305719
ZNF365_chr10_62369369_62407450	0/1	t0001	2760	137	8	35	63	9	21	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0002	2764	104	36	30	29	1	8	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0003	2763	27	1	3	19	2	2	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0004	2761	25	4	0	16	0	5	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0005	2763	8	8	0	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0006	2763	6	6	0	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0007	2763	5	0	1	3	1	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0008	2763	4	4	0	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0009	2760	2	2	0	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0010	2760	2	1	1	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0011	2760	2	2	0	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0012	2760	2	2	0	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0013	2760	2	2	0	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0014	2760	2	1	0	1	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0015	2764	2	2	0	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0016	2763	2	0	2	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0017	2760	1	0	1	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0018	2761	1	0	0	0	0	1	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0019	2760	1	1	0	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0020	2761	1	0	0	1	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0021	2760	1	0	0	0	1	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0022	2760	1	1	0	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0023	2760	1	0	0	1	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0024	2760	1	0	0	1	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0025	2760	1	1	0	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0026	2763	1	0	0	0	0	1	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0027	2763	1	0	1	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0028	2764	1	0	1	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0029	2763	1	1	0	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0030	2764	1	0	1	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0031	2764	1	1	0	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	1/0	t0032	2765	1	0	0	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0033	2763	1	1	0	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	t0034	2764	1	1	0	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF366_chr5_72434903_72512410	0/0	t0001	4025	215	25	41	122	6	21	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	1/0	t0002	4028	41	15	14	5	4	2	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0003	4025	35	17	8	2	3	5	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0004	4026	17	15	2	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0005	4024	7	7	0	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0006	4025	6	0	0	6	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0007	4026	4	3	1	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0008	4025	4	0	0	4	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0009	4024	4	2	1	0	0	1	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0010	4025	4	4	0	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0011	4025	3	3	0	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410