JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF366_chr5_72434903_72512410	0/1	t0012	4027	3	0	1	0	1	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0013	4026	3	1	0	1	0	1	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0014	4026	2	1	0	1	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0015	4025	2	0	2	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0016	4025	2	0	0	2	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0017	4025	1	0	0	0	0	1	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0018	4026	1	1	0	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0019	4025	1	1	0	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0020	4025	1	0	0	1	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0021	4024	1	0	0	1	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0022	4026	1	1	0	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0023	4026	1	1	0	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0024	4025	1	0	0	1	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0025	4026	1	0	0	1	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0026	4025	1	0	0	0	0	1	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0027	4025	1	0	0	1	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0028	4025	1	1	0	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0029	4025	1	0	0	1	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0030	4025	1	0	0	0	0	1	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0031	4025	1	0	0	1	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	t0032	4025	1	0	0	0	0	1	copy fasta	ZNF366	chr5	72434903	72512410
ZNF367_chr9_96380941_96423370	1/1	t0001	2635	284	70	43	121	10	38	copy fasta	ZNF367	chr9	96380941	96423370
ZNF367_chr9_96380941_96423370	0/0	t0002	2635	12	0	6	6	0	0	copy fasta	ZNF367	chr9	96380941	96423370
ZNF367_chr9_96380941_96423370	0/0	t0003	2635	9	7	2	0	0	0	copy fasta	ZNF367	chr9	96380941	96423370
ZNF367_chr9_96380941_96423370	0/0	t0004	2635	5	0	1	0	0	4	copy fasta	ZNF367	chr9	96380941	96423370
ZNF367_chr9_96380941_96423370	0/0	t0005	2635	1	1	0	0	0	0	copy fasta	ZNF367	chr9	96380941	96423370
ZNF367_chr9_96380941_96423370	0/0	t0006	2635	1	0	0	1	0	0	copy fasta	ZNF367	chr9	96380941	96423370
ZNF367_chr9_96380941_96423370	0/0	t0007	2635	1	1	0	0	0	0	copy fasta	ZNF367	chr9	96380941	96423370
ZNF367_chr9_96380941_96423370	0/0	t0008	2635	1	0	0	1	0	0	copy fasta	ZNF367	chr9	96380941	96423370
ZNF367_chr9_96380941_96423370	0/0	t0009	2635	1	0	1	0	0	0	copy fasta	ZNF367	chr9	96380941	96423370
ZNF367_chr9_96380941_96423370	0/0	t0010	2592	1	0	1	0	0	0	copy fasta	ZNF367	chr9	96380941	96423370
ZNF367_chr9_96380941_96423370	0/0	t0011	2635	1	1	0	0	0	0	copy fasta	ZNF367	chr9	96380941	96423370
ZNF367_chr9_96380941_96423370	0/0	t0012	2635	1	1	0	0	0	0	copy fasta	ZNF367	chr9	96380941	96423370
ZNF367_chr9_96380941_96423370	0/0	t0013	2635	1	0	0	1	0	0	copy fasta	ZNF367	chr9	96380941	96423370
ZNF367_chr9_96380941_96423370	0/0	t0014	2635	1	1	0	0	0	0	copy fasta	ZNF367	chr9	96380941	96423370
ZNF367_chr9_96380941_96423370	0/0	t0015	2635	1	1	0	0	0	0	copy fasta	ZNF367	chr9	96380941	96423370
ZNF367_chr9_96380941_96423370	0/0	t0016	2635	1	1	0	0	0	0	copy fasta	ZNF367	chr9	96380941	96423370
ZNF37A_chr10_38089337_38129625	1/1	t0001	6434	150	35	34	60	2	17	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0002	6437	52	10	14	23	3	2	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0003	6435	35	0	12	21	1	1	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0004	6437	33	7	8	10	5	3	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0005	6437	20	0	0	20	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0006	6436	20	0	0	16	0	4	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0007	6437	6	6	0	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0008	6437	6	0	0	5	0	1	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0009	6436	5	1	2	0	2	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0010	6437	4	3	1	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0011	6436	4	4	0	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0012	6452	3	0	0	3	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0013	6436	3	2	1	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625