JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF37A_chr10_38089337_38129625	0/0	t0014	6436	3	0	0	0	1	2	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0015	6437	2	0	2	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0016	6437	2	0	0	2	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0017	6437	2	0	0	2	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0018	6437	2	2	0	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0019	6436	2	1	1	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0020	6434	2	0	0	0	0	2	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0021	6434	2	0	0	0	0	2	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0022	6434	2	0	0	0	2	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0023	6438	1	1	0	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0024	6437	1	1	0	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0025	6437	1	1	0	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0026	6437	1	0	1	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0027	6438	1	1	0	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0028	6438	1	1	0	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0029	6452	1	0	0	1	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0030	6437	1	0	0	1	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0031	6437	1	1	0	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0032	6437	1	1	0	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0033	6437	1	1	0	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0034	6435	1	0	0	1	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0035	6435	1	0	1	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0036	6434	1	0	0	1	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0037	6419	1	0	0	1	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0038	6436	1	1	0	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0039	6436	1	0	1	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0040	6434	1	0	0	1	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0041	6434	1	0	1	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0042	6434	1	0	0	1	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0043	6434	1	0	0	1	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0044	6436	1	1	0	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0045	6434	1	0	0	0	0	1	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0046	6434	1	0	0	0	0	1	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0047	6434	1	0	1	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	t0048	6434	1	1	0	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF382_chr19_36600313_36639114	0/0	t0001	6685	84	14	11	49	2	8	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	1/0	t0002	6684	59	10	9	26	2	11	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0003	6686	35	10	6	12	3	4	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0004	6683	26	8	11	0	3	4	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0005	6686	13	3	5	3	0	2	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/1	t0006	6683	10	3	3	2	0	1	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0007	6688	8	6	1	1	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0008	6712	7	7	0	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0009	6682	6	0	5	0	0	1	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0010	6686	5	0	0	4	0	1	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0011	6687	5	2	0	3	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0012	6714	5	5	0	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0013	6684	4	1	2	0	1	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0014	6687	4	0	1	1	1	1	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0015	6687	4	4	0	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114