JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF382_chr19_36600313_36639114	0/0	t0016	6684	3	1	1	1	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0017	6685	3	0	0	3	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0018	6685	3	3	0	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0019	6686	3	1	0	2	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0020	6686	3	0	0	3	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0021	6685	3	0	1	2	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0022	6684	2	0	2	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0023	6683	2	0	2	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0024	6686	2	0	0	2	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0025	6686	2	2	0	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0026	6688	2	0	0	2	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0027	6684	2	2	0	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0028	6685	1	0	0	1	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0029	6682	1	0	1	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0030	6684	1	0	0	1	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0031	6684	1	0	0	1	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0032	6684	1	0	0	0	1	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0033	6684	1	0	0	1	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0034	6683	1	0	1	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0035	6683	1	0	1	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0036	6682	1	0	0	0	0	1	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0037	6684	1	0	1	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0038	6684	1	0	0	1	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0039	6683	1	0	0	0	0	1	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0040	6685	1	1	0	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0041	6683	1	0	1	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0042	6683	1	0	0	0	0	1	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0043	6685	1	0	1	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0044	6683	1	1	0	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0045	6685	1	0	0	0	1	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0046	6685	1	0	0	1	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0047	6684	1	0	1	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0048	6685	1	1	0	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0049	6685	1	0	1	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0050	6685	1	0	0	1	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0051	6687	1	0	1	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0052	6687	1	0	0	0	0	1	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0053	6686	1	0	0	1	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0054	6686	1	0	1	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0055	6686	1	1	0	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0056	6686	1	0	0	1	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0057	6686	1	0	1	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0058	6686	1	0	0	0	0	1	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0059	6687	1	0	1	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0060	6686	1	0	0	1	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0061	6686	1	0	0	1	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0062	6686	1	0	0	1	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0063	6686	1	1	0	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0064	6686	1	1	0	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0065	6686	1	0	0	1	0	0	copy fasta	ZNF382	chr19	36600313	36639114