JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF382_chr19_36600313_36639114	0/0	t0066	6687	1	0	0	1	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0067	6686	1	0	0	1	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0068	6687	1	1	0	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0069	6689	1	0	0	1	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0070	6688	1	0	0	1	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0071	6688	1	0	0	1	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0072	6696	1	1	0	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0073	6685	1	1	0	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	t0074	6684	1	1	0	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF383_chr19_37213214_37253740	0/0	t0001	5305	47	0	1	46	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0002	5305	31	8	0	18	0	5	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0003	5305	22	10	4	1	0	7	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/1	t0004	5305	21	1	11	1	4	3	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0005	5305	17	0	1	13	3	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0006	5305	16	5	0	10	0	1	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0007	5305	14	0	1	11	0	2	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0008	5305	12	0	1	8	1	2	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0009	5305	12	0	4	6	0	2	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0010	5305	11	1	5	0	3	2	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0011	5305	11	0	0	11	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0012	5305	10	1	6	0	1	2	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0013	5305	9	1	0	8	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0014	5305	8	1	2	4	0	1	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0015	5305	8	0	7	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0016	5305	8	0	1	5	0	2	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0017	5305	7	7	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0018	5305	7	0	5	1	0	1	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0019	5305	7	0	1	0	0	6	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0020	5305	7	7	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0021	5305	5	5	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0022	5305	5	5	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0023	5305	5	5	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0024	5305	4	2	1	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0025	5305	4	0	0	4	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0026	5009	3	0	0	3	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0027	5304	3	1	2	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0028	5305	3	0	0	2	0	1	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0029	5305	2	0	0	2	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0030	5306	2	2	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0031	5305	2	0	0	2	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0032	5305	2	1	1	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0033	5305	2	0	0	2	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0034	5305	2	2	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0035	5305	2	2	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0036	5305	2	2	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	1/0	t0037	5305	2	0	0	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0038	5306	2	2	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0039	5305	2	0	2	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0040	5305	2	1	0	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0041	5305	2	0	2	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740