JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF383_chr19_37213214_37253740	0/0	t0042	5305	2	0	1	0	1	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0043	5306	2	0	0	0	1	1	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0044	5305	2	0	0	2	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0045	5305	2	0	0	0	0	2	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0046	5305	2	2	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0047	5305	1	1	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0048	5305	1	0	1	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0049	5305	1	0	0	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0050	5305	1	0	0	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0051	5305	1	1	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0052	5305	1	1	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0053	5305	1	1	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0054	5305	1	1	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0055	5305	1	1	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0056	5305	1	1	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0057	5306	1	0	0	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0058	5306	1	0	0	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0059	5306	1	1	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0060	5305	1	1	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0061	5305	1	1	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0062	5305	1	1	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0063	5305	1	0	0	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0064	5305	1	0	0	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0065	5306	1	0	0	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0066	5305	1	1	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0067	5305	1	0	1	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0068	5304	1	0	1	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0069	5305	1	0	0	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0070	5305	1	0	0	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0071	5305	1	0	0	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0072	5305	1	0	0	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0073	5305	1	0	1	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0074	5305	1	0	0	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0075	5304	1	1	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0076	5305	1	0	0	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0077	5305	1	0	0	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0078	5305	1	0	1	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0079	5304	1	0	0	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0080	5305	1	0	1	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0081	5305	1	1	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0082	5305	1	0	0	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0083	5304	1	0	0	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0084	5305	1	0	0	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0085	5305	1	0	1	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0086	5304	1	0	0	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0087	5305	1	0	1	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0088	5305	1	0	1	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0089	5305	1	0	0	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0090	5305	1	0	1	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0091	5305	1	0	1	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740