JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF383_chr19_37213214_37253740	0/0	t0092	5305	1	1	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0093	5305	1	0	1	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0094	5305	1	0	0	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0095	5305	1	0	1	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0096	5305	1	0	0	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	t0097	5305	1	1	0	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF384_chr12_6661477_6694375	0/1	t0001	1581	112	60	21	15	2	13	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	1/0	t0002	1581	110	5	26	60	1	17	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	t0003	1580	11	0	7	4	0	0	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	t0004	1581	8	7	1	0	0	0	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	t0005	1580	7	4	0	2	0	1	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	t0006	1581	5	3	1	0	1	0	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	t0007	1581	2	0	0	2	0	0	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	t0008	1581	2	2	0	0	0	0	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	t0009	1580	1	0	0	1	0	0	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	t0010	1581	1	1	0	0	0	0	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	t0011	1581	1	1	0	0	0	0	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	t0012	1581	1	0	0	1	0	0	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	t0013	1579	1	0	0	0	0	1	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	t0014	1579	1	1	0	0	0	0	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	t0015	1579	1	1	0	0	0	0	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	t0016	1579	1	0	1	0	0	0	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	t0017	1581	1	0	0	1	0	0	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	t0018	1579	1	1	0	0	0	0	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	t0019	1581	1	0	1	0	0	0	copy fasta	ZNF384	chr12	6661477	6694375
ZNF385A_chr12_54364136_54389733	1/1	t0001	1340	274	55	62	125	9	21	copy fasta	ZNF385A	chr12	54364136	54389733
ZNF385A_chr12_54364136_54389733	0/0	t0002	1339	116	26	6	70	0	14	copy fasta	ZNF385A	chr12	54364136	54389733
ZNF385A_chr12_54364136_54389733	0/0	t0003	1340	10	10	0	0	0	0	copy fasta	ZNF385A	chr12	54364136	54389733
ZNF385A_chr12_54364136_54389733	0/0	t0004	1340	9	0	0	9	0	0	copy fasta	ZNF385A	chr12	54364136	54389733
ZNF385A_chr12_54364136_54389733	0/0	t0005	1341	6	0	3	0	1	2	copy fasta	ZNF385A	chr12	54364136	54389733
ZNF385A_chr12_54364136_54389733	0/0	t0006	1340	5	0	5	0	0	0	copy fasta	ZNF385A	chr12	54364136	54389733
ZNF385A_chr12_54364136_54389733	0/0	t0007	1340	4	4	0	0	0	0	copy fasta	ZNF385A	chr12	54364136	54389733
ZNF385A_chr12_54364136_54389733	0/0	t0008	1339	2	2	0	0	0	0	copy fasta	ZNF385A	chr12	54364136	54389733
ZNF385A_chr12_54364136_54389733	0/0	t0009	1340	1	0	0	0	0	1	copy fasta	ZNF385A	chr12	54364136	54389733
ZNF385A_chr12_54364136_54389733	0/0	t0010	1339	1	1	0	0	0	0	copy fasta	ZNF385A	chr12	54364136	54389733
ZNF385A_chr12_54364136_54389733	0/0	t0011	1340	1	0	0	1	0	0	copy fasta	ZNF385A	chr12	54364136	54389733
ZNF385A_chr12_54364136_54389733	0/0	t0012	1339	1	0	0	1	0	0	copy fasta	ZNF385A	chr12	54364136	54389733
ZNF385B_chr2_179436982_179866612	0/0	t0001	1934	59	30	22	2	3	2	copy fasta	ZNF385B	chr2	179436982	179866612
ZNF385B_chr2_179436982_179866612	0/0	t0002	1935	34	10	7	9	1	7	copy fasta	ZNF385B	chr2	179436982	179866612
ZNF385B_chr2_179436982_179866612	0/0	t0003	1934	17	0	8	9	0	0	copy fasta	ZNF385B	chr2	179436982	179866612
ZNF385B_chr2_179436982_179866612	0/0	t0004	1935	2	2	0	0	0	0	copy fasta	ZNF385B	chr2	179436982	179866612
ZNF385B_chr2_179436982_179866612	0/0	t0005	1934	1	1	0	0	0	0	copy fasta	ZNF385B	chr2	179436982	179866612
ZNF385B_chr2_179436982_179866612	0/0	t0006	1934	1	0	1	0	0	0	copy fasta	ZNF385B	chr2	179436982	179866612
ZNF385B_chr2_179436982_179866612	0/0	t0007	1934	1	1	0	0	0	0	copy fasta	ZNF385B	chr2	179436982	179866612
ZNF385B_chr2_179436982_179866612	0/0	t0008	1934	1	0	0	0	0	1	copy fasta	ZNF385B	chr2	179436982	179866612
ZNF385B_chr2_179436982_179866612	0/0	t0009	1935	1	1	0	0	0	0	copy fasta	ZNF385B	chr2	179436982	179866612
ZNF385B_chr2_179436982_179866612	0/0	t0010	1935	1	1	0	0	0	0	copy fasta	ZNF385B	chr2	179436982	179866612
ZNF385C_chr17_42020576_42103473	0/0	t0001	1388	153	75	25	35	7	11	copy fasta	ZNF385C	chr17	42020576	42103473
ZNF385C_chr17_42020576_42103473	0/1	t0002	1386	38	1	12	21	0	3	copy fasta	ZNF385C	chr17	42020576	42103473
ZNF385C_chr17_42020576_42103473	1/0	t0003	1388	18	1	1	12	1	2	copy fasta	ZNF385C	chr17	42020576	42103473