JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF385C_chr17_42020576_42103473	0/0	t0004	1386	8	1	0	7	0	0	copy fasta	ZNF385C	chr17	42020576	42103473
ZNF385C_chr17_42020576_42103473	0/0	t0005	1388	7	7	0	0	0	0	copy fasta	ZNF385C	chr17	42020576	42103473
ZNF385C_chr17_42020576_42103473	0/0	t0006	1388	5	5	0	0	0	0	copy fasta	ZNF385C	chr17	42020576	42103473
ZNF385C_chr17_42020576_42103473	0/0	t0007	1388	2	0	0	2	0	0	copy fasta	ZNF385C	chr17	42020576	42103473
ZNF385C_chr17_42020576_42103473	0/0	t0008	1388	2	0	2	0	0	0	copy fasta	ZNF385C	chr17	42020576	42103473
ZNF385C_chr17_42020576_42103473	0/0	t0009	1386	1	0	0	1	0	0	copy fasta	ZNF385C	chr17	42020576	42103473
ZNF385C_chr17_42020576_42103473	0/0	t0010	1386	1	0	0	1	0	0	copy fasta	ZNF385C	chr17	42020576	42103473
ZNF385C_chr17_42020576_42103473	0/0	t0011	1388	1	0	0	1	0	0	copy fasta	ZNF385C	chr17	42020576	42103473
ZNF385D_chr3_21407218_21756210	0/0	t0001	8961	24	1	2	16	0	5	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0002	8957	22	4	5	7	2	4	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0003	8967	17	3	5	6	2	1	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0004	9305	11	0	1	7	0	3	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0005	8956	10	2	1	5	0	2	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0006	9306	9	0	1	6	0	2	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0007	8967	8	1	4	0	2	1	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	1/0	t0008	9291	7	0	4	0	0	2	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0009	8961	6	0	0	6	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0010	8961	5	4	1	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0011	8967	5	5	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0012	8967	3	3	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0013	8963	3	3	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0014	8956	3	1	0	2	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0015	8957	3	3	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0016	8957	3	0	2	0	1	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0017	9291	3	0	1	0	0	2	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0018	8961	3	0	1	0	1	1	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0019	8967	2	0	2	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0020	8957	2	0	1	0	0	1	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0021	8967	2	0	0	2	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0022	8961	2	1	0	1	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0023	8968	2	2	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0024	8967	2	2	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0025	8957	2	2	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0026	8967	2	1	1	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/1	t0027	8961	2	0	0	0	1	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0028	8961	2	2	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0029	8956	2	0	1	1	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0030	8963	2	2	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0031	8961	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0032	8956	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0033	8956	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0034	8967	1	0	1	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0035	8963	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0036	8963	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0037	8951	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0038	8967	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0039	8963	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0040	8955	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0041	8962	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0042	8959	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210