JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF385D_chr3_21407218_21756210	0/0	t0043	8962	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0044	8967	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0045	8962	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0046	8955	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0047	9306	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0048	8967	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0049	8958	1	0	0	1	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0050	8967	1	0	0	1	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0051	8961	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0052	8951	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0053	8967	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0054	8961	1	0	0	1	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0055	8957	1	0	1	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0056	9291	1	0	0	0	0	1	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0057	9291	1	0	1	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0058	9291	1	0	0	0	0	1	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0059	8967	1	0	0	0	1	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0060	8957	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0061	9306	1	0	0	1	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0062	9314	1	0	1	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0063	9312	1	0	1	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0064	9309	1	0	0	1	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0065	9306	1	0	0	0	0	1	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0066	9305	1	0	0	0	0	1	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0067	9305	1	0	0	0	0	1	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0068	9304	1	0	0	1	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0069	9306	1	0	0	0	0	1	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0070	9308	1	0	1	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0071	9307	1	0	1	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0072	9306	1	0	0	1	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0073	9305	1	0	0	1	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0074	8956	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0075	9306	1	0	0	1	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0076	8958	1	0	0	1	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0077	9304	1	0	0	1	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0078	8984	1	0	0	1	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0079	8984	1	0	0	1	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0080	9291	1	0	1	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0081	8963	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0082	8963	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0083	8951	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0084	8961	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0085	8961	1	0	0	1	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0086	8961	1	0	1	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0087	8967	1	0	1	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0088	8961	1	0	0	1	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0089	8963	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0090	8963	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0091	9305	1	0	0	1	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0092	8962	1	0	1	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210