JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF385D_chr3_21407218_21756210	0/0	t0093	8957	1	0	0	1	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0094	8961	1	0	0	0	0	1	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0095	8957	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0096	8967	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0097	8962	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0098	8967	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0099	8967	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0100	8967	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0101	8967	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0102	8962	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0103	9291	1	0	1	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0104	8967	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0105	8967	1	0	0	0	0	1	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0106	9306	1	0	0	1	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0107	9306	1	0	0	1	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0108	9305	1	0	0	1	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0109	9304	1	0	1	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0110	9308	1	0	1	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0111	9307	1	0	1	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0112	8959	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0113	8952	1	0	1	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0114	8967	1	0	1	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0115	8961	1	0	1	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0116	8961	1	0	0	1	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	t0117	8961	1	0	1	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF391_chr6_27383759_27408908	0/1	t0001	2967	168	32	20	89	3	23	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	1/0	t0002	2966	138	37	28	60	4	8	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	t0003	2967	21	1	7	6	2	5	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	t0004	2967	18	1	1	14	0	2	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	t0005	2967	8	2	5	0	1	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	t0006	2967	6	1	5	0	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	t0007	2966	6	5	1	0	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	t0008	2967	5	4	1	0	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	t0009	2966	4	0	0	4	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	t0010	2967	4	0	4	0	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	t0011	2966	4	0	0	0	0	4	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	t0012	2967	3	2	1	0	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	t0013	2967	2	2	0	0	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	t0014	2967	2	2	0	0	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	t0015	2967	1	0	0	1	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	t0016	2967	1	0	0	0	0	1	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	t0017	2966	1	0	0	0	0	1	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	t0018	2966	1	0	0	1	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	t0019	2966	1	1	0	0	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	t0020	2966	1	1	0	0	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	t0021	2966	1	1	0	0	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	t0022	2966	1	0	0	1	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	t0023	2967	1	0	0	1	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	t0024	2967	1	0	0	1	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	t0025	2967	1	1	0	0	0	0	copy fasta	ZNF391	chr6	27383759	27408908